Populus nigra (Lombardy poplar): 133680853
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Entry
133680853 CDS
T10372
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133680853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133680853
03110 Chaperones and folding catalysts [BR:
pnz03110
]
133680853
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133680853
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133680853
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
133680853
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
133680853
Chaperones and folding catalysts [BR:
pnz03110
]
Heat shock proteins
HSP60 / Chaperonin
133680853
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
133680853
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133680853
Exosomal proteins of other body fluids (saliva and urine)
133680853
Exosomal proteins of breast cancer cells
133680853
Exosomal proteins of colorectal cancer cells
133680853
Exosomal proteins of bladder cancer cells
133680853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CO_dh
Motif
Other DBs
NCBI-GeneID:
133680853
NCBI-ProteinID:
XP_061959849
LinkDB
All DBs
Position
1:45621186..45625996
Genome browser
AA seq
574 aa
AA seq
DB search
MHRFTSSLASKARIVRSSTNQIGSRLSWSRNYAAKDIRFGVEARAGMLKGVEELADAVKV
TMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDTAGDGT
TCATVLTQAIFTEGCKSVAAGMNAMDLRRGISMAVESVVTNLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLSNELEVVEGMKLDRGYISPYFITDQK
TQKCELDDPLILIHDKKVSSLHAVVKVLELALKRQRPLLIVAEDVESEALATLILNKLRA
GIKVCSIKAPGFGENRKAILQDLAALTGGEVITEELGLNLENVDLDMLGSCKKVTVSKDD
TVILDGAGDKKSIEERCEQIRSAIDSSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
SEKKDRVTDALNATKAAVEEGIVPGGGAALLYASKELDKLQTANFDQKIGVQIIQNALKT
PVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTEAVVTDLPKDVKDAPAMGPGMGMDY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcttcacctcgagcctcgcttctaaagctcggattgttaggagcagcaccaat
cagattggaagtaggttgagttggagcagaaactatgctgccaaagacataagattcggt
gtggaggctcgtgctgggatgctcaagggtgttgaagagctagctgatgctgtcaaagtc
accatgggccctaagggtcgcaatgtggttattgaacaaagctttggtgcccctaaagtg
acaaaagatggtgtgactgttgctaaaagcattgaattcaaggataaagtcaagaatgtt
ggtgctagcctggtgaagcaggttgcaaatgccaccaacgacactgcaggcgatgggacc
acttgtgctacggttctcactcaagcaatatttactgaaggatgcaaatcagttgcagct
ggaatgaatgcaatggacctaagacgtggtatcagcatggcagttgaatcagttgtaacc
aatttgaagagcagagcaagaatgattagcacatccgaggaaattgcacaagttggtaca
atatcagcaaatggggagagggaaattggtgaattgatagcaaaggccatggagaaggtt
ggcaaagagggagttataacaattcaagatgggaaaacattatctaatgagttggaagtt
gtcgaggggatgaagcttgacaggggctatatatccccttatttcatcacagaccagaaa
acccaaaaatgtgaattagatgaccctctcattctgatccacgacaagaaagtctcaagt
ttgcatgctgtggtgaaagtactagagttggctttaaagagacaaaggcccttgctgatt
gttgctgaagatgtggaaagcgaggccttggcaactcttattttaaataagcttcgtgct
ggaatcaaggtctgttccattaaggcccctggttttggagagaacaggaaggccatattg
caagatctggctgcactcacaggaggcgaagttataactgaagagcttggcctcaatctt
gaaaatgtggatttggatatgcttggcagttgcaaaaaggttacagtatcaaaggatgac
acagttattcttgatggtgctggcgataagaagtccattgaagaaagatgtgaacagatc
cgatctgcaatagattcaagcacttctgactatgacaaagagaagttgcaagaaagattg
gcgaaactttctggtggtgttgctgtgctgaagattggaggagctagtgaagctgaagtc
agtgagaagaaagatagagttacagatgccctaaatgccacaaaggctgctgtagaagag
ggtattgtgccaggtggtggtgctgctcttctttatgcatcaaaagaattggataagctt
caaactgcaaactttgaccagaagattggtgttcaaattatccagaatgcccttaagact
cctgtgcatacaattgctagtaatgcgggagttgagggagctgttgttgttggtaagcta
ttggagcaggacaaccctgatctagggtatgatgctgccaaaggtgaatatgttgatatg
gtgaaagctggaattattgacccactgaaagtaattagaactgctttggtcgatgctgcc
agtgtctcgtcgttgatgacaacaactgaggctgttgtaactgatcttccaaaggatgta
aaggatgctccagcaatgggtccaggcatgggcatggattattga
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