Populus nigra (Lombardy poplar): 133681082
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Entry
133681082 CDS
T10372
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133681082
03036 Chromosome and associated proteins [BR:
pnz03036
]
133681082
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
133681082
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
133681082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HHH_9
Spt6_S1
HTH_44
Tex_central_region
S1
DUF8715
Tex_N
DUF8511
Motif
Other DBs
NCBI-GeneID:
133681082
NCBI-ProteinID:
XP_061960156
LinkDB
All DBs
Position
1:complement(47742804..47754761)
Genome browser
AA seq
1627 aa
AA seq
DB search
MKKARRKLPFTLVDEDDEEEEVAVKEKRAQNVSVDDDEDGLDKFETDGFIVDYNEEEVEG
DCDGKDEQMKKKMRKKKSSKNLVLDDDDLELLRENQKPGLFQTKRVGNKKFKRLRKAKGC
ALGKDYGLSDDDVSLYDESAEEKEAMYDDDINDMTDFIVDDDERYEKRAPMRLWELKEKK
SRPVTMASSSSLEEAGYVFGDADELLKRQVLIKIVKPDDYDNFELDHFMAERDDHVKKTD
LPERMQVMSEEITCTALVGETRRQEESSWILDQLITDMYPLLCKKKGQEGNGVGLLKKIN
KEDIVRFLEMHDLDKYDIPFIAMYRKEKCLSMLEDLGEDGIQNECSNDTEGKPRLKWHKI
LWAINELDRKWLLLQKRKSMLEESFKKRYEEECNNIDDMARLSLINLQFDTIMKSLMLAE
TEKDIDDVSMKFSLHFPPTEEVMEGKFKRRERRSAYSDYIKAGLWELAVKFVYSSKQFCQ
HLRQEKMGMDFWEDLNESPEVIASKFTCASLETPEAVLKGARHIAALEISCEPSVRKHAR
GFFTDEALVSTRPTPKGAKEIDFCHQFSSVKWLRDKPLGKFQDAQWLLIQKAEEEKLLEV
TIKLPEDSLNKLFSYSHKIYLVGGDDGYTQLWDEQRKLILQDVFSNCLLPSLEKETRVLL
TTRAKCLVLMEYGEQLWNRASVAPYPHKQNVAGLEEGTGPRVMACCWGPGKPPTTFVMLD
SCGQLLDVLQSGSISLRSQNVTGLQRKKYDQLRVHKFILSHQPDVIVLGAANASCSRLKD
DIKEIVLKIEESSIDADRVLNGIGVIYGDETLPQLYEKSEVSLRHLPGQEGIVKRAVALG
RYLQNPLAMIATLCGVQKEIVSWKLTSLDHFLTPEEKYGVIEMLMVDITNQVGVDINAAV
SQDWLSAPLQFVSGLGSQKAAFLQRELAAGKIVNNRKELAICGLTEKKIFFNAVGFLRVC
CGEILSFGCEYDMLDGTRIHPESYGLAEKLVKDVYDDVAEAHPLKHVRNNPQLLKDFDID
AYADNFEIEQGENKKLTLYDIKTELLHGFLDPRRPYEEPTQDEEFCLISGKNEDAFAEGR
IVQAIVCRVLSHRAFCAVDSGLIGMITKDDYSDEAADYSLTKRLREGDILTCKIKQIDKS
RHQVLLTCKESELKSSRDQNLHELEPYYCGGQSSLVSHQEIACKEDLKNKHFISRMIIHP
HYENMTQNQAVEFLADKDVGEHVFRPSSRGLHYLTLTVKVFNGLYVHKDIIEDGKNLKDI
SSMLDLGKTLKIGDDIYKDLDEVISQYVDPLVTHLKAILSFRKFKKGSKAEVDELLKSEK
SDYPMRIPYCFGVSYEHPGTFILFYIRTNLHHEYIGLHPKGFKFRKQTFRKVEQLVAYFQ
KHIDDLKHQPAQMTRPITGSSARASTECGNEGGWKGQLNSSKDELSTLVSAGKKDCTRDD
GGIGGHGSGQGRGHPSGLPRPNCVHGHGNRGGFGNGRGGNNRNGSDSGNNTSYWHDSGGN
SGAGSSYSWGNNTGGNASSWGNNAGGNGSSSSWGGSGHPVNAGGRNSGGRGDDCQGIPGS
GPPNGSDWMGSNKEGGNNFWGTEGSSGGNLGGFNTNSESGNTGWGAGSRKSSLHPAGEDG
WSGGSGW
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaggcaaggagaaaattacccttcactttagtcgatgaagatgatgaagaggaa
gaagtggcagttaaggagaaaagggcccaaaatgttagtgtagacgatgatgaagatggt
ttggataagtttgagactgatgggtttatagtggattataacgaggaagaagtggaaggt
gactgtgatgggaaagatgagcaaatgaagaagaaaatgaggaagaagaaatcttcaaag
aatcttgtccttgatgatgatgatcttgagttgctccgagaaaatcaaaagccaggcctg
ttccaaacaaagagagttggaaataaaaaatttaaacggctcagaaaggccaagggctgt
gctctgggaaaagactatggattgtctgatgatgatgtatcattatacgatgaaagtgct
gaagaaaaggaagctatgtatgatgatgacataaatgacatgacagattttattgtagat
gatgatgaaagatacgagaaaagagcccccatgaggttgtgggagctgaaagaaaagaag
tcaaggccagtaacaatggcttcttcttcttccctagaggaagctggctacgtatttggt
gatgctgatgaactccttaagcgtcaagttctgattaagattgtcaagccagatgattat
gacaactttgagctggatcattttatggctgagagggatgatcatgtgaagaagactgat
ttgcccgagaggatgcaggtgatgtcagaggaaatcacttgcactgctttagttggcgaa
acaagaagacaagaggagagttcttggatacttgatcagcttatcacagacatgtatcca
ttattgtgtaagaaaaaaggtcaggaaggaaatggagtaggtctgcttaagaagattaac
aaggaagatatagtgaggttcttggaaatgcatgatttggataagtatgatattccattt
attgctatgtatcgaaaagagaaatgccttagtatgttggaagatctgggggaagatggt
atacaaaacgaatgtagcaatgacacagagggaaaacctagactgaagtggcataagatt
ctctgggccatcaatgaactggacagaaagtggttgcttctccagaaaagaaagagcatg
cttgaagaatcctttaagaagcgttatgaagaggaatgcaataatattgatgacatggca
agactttctttgatcaatctgcaatttgacacaatcatgaagtctctgatgctggctgaa
acagagaaggatattgatgatgtcagtatgaagtttagcttgcattttcctccaactgaa
gaggtcatggaaggaaaatttaagagacgagagaggaggtcggcatacagtgactacatt
aaggctggtttgtgggagcttgcagtaaagtttgtctacagctccaagcaattctgccag
catctccgtcaagagaaaatgggaatggatttttgggaggatcttaatgaatctcccgag
gtgatagcttcaaagtttacatgtgcaagtttagaaactccagaagcagtgcttaaagga
gccaggcacatcgctgctctggagattagctgtgagccttctgtcaggaaacatgcccgg
ggtttttttactgatgaagctctagtctcaaccagaccaactcccaaaggagccaaggag
attgatttctgccatcagttttcatctgttaagtggctacgtgataagccccttggtaaa
tttcaggatgcacagtggctccttattcagaaagctgaagaagagaagctccttgaagta
accataaaattgcctgaagattctctgaataagttgtttagttactctcacaaaatatat
cttgtgggaggtgatgatgggtatacccaactctgggatgaacaacgaaagttaatactt
caggatgtgttttcaaattgtctccttccttcattggagaaggaaactcgtgtcttgttg
accacaagagcaaaatgtttggtgcttatggaatatggagagcagttatggaacagggca
tctgttgccccatatccacacaagcagaatgttgctggcctggaggaaggtactggacca
agggtcatggcttgctgctggggtcctggaaagccaccaactacgtttgtaatgttagat
tcatgtgggcaattgcttgatgtgttgcaatctggatccattagtctgcggtctcagaat
gttactggcctacaacggaagaaatatgatcagctacgtgtccataagtttattctaagt
catcagcccgatgttattgtcctcggtgcagcaaatgcgtcctgttcacggttgaaggat
gatatcaaagagattgttttgaagatagaggaaagttctatagatgctgaccgagtgcta
aacgggattggtgttatttatggagatgaaaccttgccccagctttatgaaaaatcagaa
gtttcattgcgccatttgcctggacaagaaggcattgtcaaacgagctgtggctctgggg
cggtacctgcaaaatccattggctatgattgctacactgtgtggtgtccagaaagagatt
gtttcttggaagcttacctccttagaccactttctaacacctgaagagaagtatggggtg
attgaaatgctgatggtggatattaccaatcaggttggtgtggacataaatgctgctgta
agccaagactggctctctgctcctcttcagtttgtatctgggcttgggtctcagaaggca
gcctttctacagagggagttggctgctggtaaaatagttaataatcgaaaagagttggca
atttgtggattgacagaaaagaaaattttctttaatgcagttggctttttgcgtgtctgt
tgtggggaaattctctcttttggatgtgaatatgatatgttggatggaacaagaattcat
cctgaatcatatggtcttgcagagaaattggttaaggatgtctatgatgatgttgctgag
gcacatcccttaaaacatgttagaaacaatccacagctgctgaaagattttgatattgat
gcttatgcagataattttgaaatagagcaaggagaaaataagaaactgactctttatgac
attaaaactgaacttttgcatggatttcttgaccctcgtcgtccatacgaagaacctact
caggatgaggaattctgtttgatatctggcaaaaatgaggatgcatttgctgaaggaaga
attgtacaggctattgtttgcagagttctgtcacaccgagcattttgtgcagttgactcc
ggcttgattggcatgatcacgaaggatgattattcagatgaggctgctgattattccttg
acaaagaggcttcgagaaggtgatattcttacctgtaagataaaacaaattgacaagagc
agacaccaggtgcttttaacttgtaaagaaagtgaactgaagagttcaagagaccagaac
ttgcatgagcttgaaccttattattgtggaggtcagagcagtttagtaagtcatcaggag
atagcctgcaaggaagacctcaaaaataaacatttcatttcaaggatgattattcatcct
cattatgaaaatatgacgcagaatcaggcagtggagttcctggcagacaaggatgttggt
gagcatgtttttcgtccaagttcaaggggactgcattatttgactctaaccgtgaaagtc
tttaatggactttatgttcataaagacataatcgaagatgggaagaacctcaaagacatc
tcaagcatgcttgatcttgggaaaacattaaagattggagatgacatttataaggattta
gatgaggttattagtcaatatgttgacccattggtgacccacctgaaagcaattctaagt
ttccgaaaatttaagaagggctcaaaagcagaggttgatgagctcttaaaatctgagaaa
tcagattatccaatgaggataccttactgctttggcgtttcgtatgagcatcctggaact
ttcatcttgttttacataagaacaaatctacatcatgagtatataggtctgcatcctaag
ggattcaaatttaggaagcagacattcaggaaggttgagcagctcgtcgcatatttccag
aaacatattgatgatctaaagcatcagccagcacagatgacaagacccattaccggttct
tctgctagagcatccacagagtgcggtaatgaaggtggttggaaaggccagctaaactca
agcaaagatgaactgtcaacacttgtctctgcaggcaagaaagattgtactagagatgac
ggtggcataggtggtcatggtagtggtcagggacgtggacatcctagtgggttacctcgg
cctaattgtgttcatggacatgggaacagaggtggctttggtaatggaaggggtggtaac
aaccgcaatggaagtgactctggaaacaatacctcttactggcatgatagtggtggaaat
tcaggtgctggctctagctacagttggggcaacaataccggtggaaatgctagcagttgg
ggaaacaatgctggtggaaatggtagcagttccagttggggtggcagtgggcatcctgtg
aatgctggtggtcgcaattcgggtggaagaggtgatgattgtcaagggatccctggaagt
ggtcctccaaatggtagtgattggatgggtagtaacaaagagggagggaataatttttgg
ggtactgagggcagcagtggtggaaatcttggagggtttaatactaattctgagtctggg
aatactggatggggcgctggttctagaaagagttccttacaccctgctggtgaggatgga
tggtcaggaggtagtggttggtga
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integrated database retrieval system
