Populus nigra (Lombardy poplar): 133681525
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Entry
133681525 CDS
T10372
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133681525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133681525
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133681525
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
DUF7885
F-box-like
LRR_NXF1-5
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
133681525
NCBI-ProteinID:
XP_061960570
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Position
2:39924017..39926973
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AA seq
584 aa
AA seq
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MLRKANSFPEEVLEHVLSFITNDKDRNAVSLVCKSWYEIERWCRKRIFVGNCYAVRPEMV
IRRFPELRSVELKGKPHFADFNLVPDGWGGCVYPWIAALATAYPWLEEIRLKRMVVSDES
LKVIAKSFKNFKVLVLSSCEGFSTDGLAAVAANCRNLRGLDLRESEVDDPSGQWLSRFPD
SFTSLASLNISCLGAEVSFSALERLVGRCPDLKTLRLNHAVPLDKLANLLRGAPQLVELG
TGAYSAELQPDVFSNLAGAFSGCKELRSLSGFWNVFPGYLPAVYPVCSGLTSLNLRYANI
QGADLIKLVSQCPSLQRLWVLDYIEDIGLEALAACCKDLTELRVFPSDPYGAEPNVSLTE
RGLVSVSEGCPKLHSVLYFCRQMTNAALVTIAKNRPSMTCFRLCIIEPRAPDYQTLQPLD
LGFGAIVENYKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCE
KLCKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFRACKLLGQKMPRLNVEVIDER
GPPDLRPESCPVEKLYIYRTIAGPRFDMPGFVWTMDEDSVLRFS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaaggcgaattcgttcccggaggaagtgcttgagcatgtgttgtcttttatc
acaaacgacaaagacaggaacgccgtatcgctggtgtgtaagtcgtggtacgagatagag
aggtggtgtaggaagaggatatttgtaggcaactgttatgcggtgaggccggagatggtt
ataaggaggtttccggagctcagatcggtggagctcaaaggaaagccgcactttgcggac
tttaatttggtgcctgacggttggggaggttgtgtttacccttggatcgcggcgttggct
actgcgtatccgtggttggaagagattaggttgaagaggatggtggtttcagatgagagt
ttgaaggtgattgctaagagttttaagaattttaaggttttggtgctttcgtcttgtgag
ggtttctctactgatggacttgctgccgttgcggccaattgcaggaatctgagggggctg
gatttgcgagagagtgaggtggatgatccaagtgggcagtggttgagccgctttcctgac
tcgtttacatcactcgcgtctcttaatatttcctgcttgggggctgaggttagtttctca
gctctggagcgcctggtaggccggtgtcctgatctgaagactcttcggctcaaccatgct
gtgcccctcgacaagcttgccaatcttcttcgcggtgcaccgcaactggttgaattgggc
acaggtgcttactcagccgagttgcagcctgatgtattctcaaacctggcaggagctttt
tctgggtgtaaagaactgaggagcctatctgggttttggaatgtttttccaggttacctt
ccagcagtttaccctgtttgttctggcttaacatcactcaacttgaggtatgctaatata
caaggcgctgatctcattaagcttgtcagtcaatgcccaagtttgcagcgcttatgggtg
ctggattacattgaagacattggactcgaagctcttgcagcatgctgcaaggacctgaca
gagttgagggtgtttccatctgacccatatggtgcggaaccaaatgtatccttgacagaa
aggggccttgtctctgtctctgaaggctgtcccaagcttcattcagttctgtacttttgc
cgtcaaatgactaatgctgccctagttacaatagcgaagaaccgtccaagtatgacttgc
tttcgtctttgtattattgaaccacgggctcctgattatcaaacactccagcctctggat
ttgggttttggagccattgttgaaaactacaaggatcttcggcgtctttccctctcaggt
ctattgactgatcgcgtgtttgagtacattggaacttacgccaagaagttagagatgcta
tctgtggcatttgctggggatagtgatctgggactccaccatgtgttgtctgggtgcgaa
aagctttgcaaactagagataagggattgtccctttggtgacaaagctcttttggccaat
gctgcaaagctggagacaatgcgatccctttggatgtcttcttgctctgtgagtttcaga
gcatgtaagctgctgggtcagaagatgcctagactcaatgttgaagttattgatgagagg
ggacctccagatttgaggccggaaagctgccctgttgagaagctttatatatacagaacc
attgcggggcctaggtttgacatgcctgggtttgtttggacaatggatgaagattcagtg
ttaaggttttcttga
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