KEGG   Populus nigra (Lombardy poplar): 133681545
Entry
133681545         CDS       T10372                                 
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
  KO
K11600  exosome complex component RRP41
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133681545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133681545
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     133681545
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     133681545
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 133681545
NCBI-ProteinID: XP_061960602
LinkDB
Position
2:42897339..42901800
AA seq 241 aa
MEFVNPEGLRLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQ
QINDQALVRCEYSMANFSTGDRRRKPKGDRRSTEISLVIRQTMEECILTNLMPRSQIDIY
VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGFLNSTPLLDLNYVEDSAGGPD
VTVGILPKLDKVTLLQMDAKLPIDTFENVMQLAVEGCKAIANYIREVLLENTKQLEYRRG
L
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagttcgtgaaccctgaaggtcttcgtctcgatggtcgccgccccatggaaatgagg
caacttagagcacaaatcggtgctgtagccaaagcagacggctctgctgtttttgagatg
ggaaatactaaagtaattgctgccgtttatggacctagagaggttcaaaataggagccaa
cagattaacgaccaagcactggtgcggtgtgagtacagcatggctaatttcagtacagga
gatcggaggcgaaaaccgaagggggacaggcgatcaacagagatttcgttggttattcgt
cagacaatggaagaatgcatattgacgaatctaatgccccgttctcagattgatatatat
gtgcaagttctccaagctgatggaggaactagatctgcatgcatcaatgctgcaactttg
gccttagcagatgcaggtatccccatgcgtgatcttgttacttcttgtagtgctggattc
ctcaatagcactcctcttcttgatttaaactatgttgaagacagtgcaggaggtcctgat
gtcactgttggaatcctacccaagttggacaaagtgacacttcttcagatggatgctaag
ctgccaattgatacctttgaaaatgttatgcaacttgctgttgaaggctgcaaggcaata
gcaaattacattcgtgaagttttgctagagaataccaaacagctggagtatcgacgtggc
ttgtag

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