Populus nigra (Lombardy poplar): 133681781
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Entry
133681781 CDS
T10372
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03430
Mismatch repair
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133681781
03460 Fanconi anemia pathway
133681781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133681781
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
133681781
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
133681781
NCBI-ProteinID:
XP_061960900
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Position
2:40204487..40211230
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AA seq
915 aa
AA seq
DB search
MESSAITIRPINKAAVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGLESFQ
VIDNGCGVSPNNFKVLALKHHTSKLGDFHDLQSLTTFGFRGEALSSLCVLGDLTVETRTK
NEPVATHLTFNHSGLLTTERKTARQVGTTVTVKKLFSSLPVRSKEFSRNIRKEYGKLISL
LNAYALISKGVRIVCSNTTGKNAKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDIS
GSCKVEGFLSKSGQGSGRNLGDRQYYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMN
FTIPTTACDVNVTPDKRKIFFSDESSILLALREGLEKKFSSSNTCYSVNKFENHAKAADS
SQLCSPREKSNMLSKQSSANGNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEK
FMMKDFALRLHGIKKTDSLTNSNSCKATTHLNTVTGQNAQCPSRVVERVKGDSNGPSGSF
QSKLSNFLTVNKRKREDITTQLSEVPVLRNQTSECQLKKSDIDIHDAGTSRPFNHHHIDD
STEFIDAEPPIHHSTDVIINKTRNNSGLQPKLAEDPSGEQNSSSPDDVPSITSPCKGLGN
LLEDLPVASPPPQSSIELLDAPVPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFTFG
GTKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLFRKEDFGRMKVIGQFNLGFII
GKLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRK
NGFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTA
DSVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLID
MSSIYERPDETEAGL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggaatcttccgcaatcactatcaggcctataaacaaagccgctgtccacagaatctgc
gctggtcaagtgattttggacctctcatccgcagtcaaggagcttgttgaaaacagcttg
gatgctggcgctacttccatcgaaatctctttgaaagactacggcctggaatccttccag
gtcatcgataatggctgcggcgtctctcctaataatttcaaggttctggcactcaagcac
cacacctccaaattgggggactttcatgatcttcagtctttgaccacatttggtttcaga
ggagaggcattgagttcgctttgcgtgttaggagacctaactgttgaaacaaggaccaaa
aacgagccagtggctacacacttgacttttaatcattcaggtttgttaacaaccgagaga
aagacagcccgacaggttggcacgacagtcactgttaagaagttgttttccagtttgccg
gtgcgaagcaaagaatttagccgcaacattcgcaaggaatacggaaagcttatttcttta
ttgaatgcctatgctcttatttcaaaaggtgttcgcatagtctgctctaacacaactggt
aaaaatgcaaagtctgtagtactaaaaacccaaggaagtgattcccttaaagataacatc
ataacagtgtttggcgtgaacaccttcagctgcttagagcctgtggatatagatatatca
ggcagttgcaaggttgaaggcttcctttctaagtctggtcaaggcagtggtcgcaatttg
ggtgatagacaatactattttgtaaatggtcgaccagtggacatgcctaaagtcagcaag
cttgtgaatgaactatacaaaggtgcaaactcccgacaatatcccatcgcaatcatgaat
ttcaccattccaactacagcgtgtgatgttaatgtgactcctgacaaaagaaaaatattc
ttttctgatgagagctctatactgcttgctctaagggagggactggaaaaaaaattttct
tcaagtaatacctgttattctgttaataaatttgagaatcatgctaaggcagcagatagc
tctcagctgtgctctcctcgtgagaaatctaatatgttatcaaaacaatcatctgcaaat
ggcaatgacagtgaagaaactcaaacggatgcagaggacagcagtccactcatgacggtt
gaagtcaaatccaagccctttcaagttggagaaagatccatccatgacatcgaagaaaag
tttatgatgaaggactttgctcttagattacatggcattaagaaaactgatagtcttaca
aacagtaacagctgcaaagcaacgacacatctcaatactgtgacgggtcaaaatgcacaa
tgcccgtcaagagtggttgagcgagtaaagggggattcaaatggtccttcaggctccttt
caatcaaaactcagcaattttttaactgtcaataagagaaagcgtgaagacattactaca
caattgtctgaagttcctgttctaagaaatcagacctctgaatgtcaattgaagaaaagt
gatattgacattcatgatgcgggtacaagtcgtccttttaatcatcaccacattgatgat
tctactgagtttattgatgctgagccccccatacatcacagcacagatgtgatcatcaat
aaaacaaggaataattcaggattgcagcctaaacttgcggaggatccatcaggtgagcaa
aattcatcttctcctgatgatgtcccatcaattacttccccttgcaaagggcttggaaat
ttgttagaggatcttcctgttgcctctcctccacctcaatcttccatcgaattattagat
gctccagtgcccttttctgcccaacagatatgctccaccttgcaatttagctttcaagac
ctgcattcaagaaggatgcagaggctgtcaaggttgcaatctggcaaattcacgtttgga
ggcacaaagagaagtcataggagctatgctgctgctacactggagctctctcaaccagac
aatgaggagcggaaattaagggctttagctgctgctacaactgagttagaaagactattc
agaaaagaagactttggtagaatgaaggtgattggtcaatttaatcttggttttatcatt
gggaaattagatcaggatttgtttatcgtggatcagcatgctgctgatgagaagtataat
tttgagagactctgtcaatcaaccattttaaaccagcagcccttgcttcggccactgagg
ctggagttatctccagaagaggaagtagttgcttcaatgaacctagacataatcagaaaa
aatggatttgctttggaagaggatccacatgcactacctgggcatcattttaaattgaaa
gctgtgccctttagtaagaacataacttttggagttgaagatgtgaaggatctgatttct
actcttgctgatagtcaaggggaatgctccataatcagtagatacaaaatggacactgct
gattccgtctgcccatcaagagttcatgcaatgtttgcatcacgtgcatgcagatcatca
gttatgattggagatgcactagggaggaatgaaatgcagaagatacttgagcatttggtc
gatctaaagtccccctggaattgcccccacggcagaccaaccatgcgccatttgattgac
atgtcatccatttacgaaaggccagatgaaacggaagcgggcttgtga
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