Populus nigra (Lombardy poplar): 133681834
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Entry
133681834 CDS
T10372
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
133681834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133681834
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
133681834
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
DNA-PKcs_N
Motif
Other DBs
NCBI-GeneID:
133681834
NCBI-ProteinID:
XP_061960977
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All DBs
Position
2:44653939..44659617
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AA seq
682 aa
AA seq
DB search
MARNKEGLVLLLDVGPTMYSALPEIKKVCSMLIQKKLIYGKFDEVGVVVFGTQETDNELT
KEVGGYEHVVVLRNIKVVDGDLVDAFQELPRGNFDGDYLDAIVVGMDMLIKKYQATNKGK
KRLCLITNALCPIKDSCEGTKEDQVNTIAAQMSAHGMKMESVIVRGRLCGGGDQRIMAEN
DRLLNLFSAKTSARAVYVEGPTALLGAVKTRNISPVTIFRGDLELGSKMKIKVWVYKKTS
EEKFPTLKKYSDKAPPTDRFATHEVKVDYEYKSVEDPNKVVPPEQRIKGYRYGPQVVPIS
SAEWDAVKFKPEKSVKLLGFTDASNIMRHYYMKDVNVFIPEPGNARAALAVSALARAMKE
MNKVAILRCVWRQGQGSVVVGVLTPNISEKDSTPDSFYFNVLPFAEDVREFQFPSFSSFP
ASWQPNEQQQEAADNLVKMLDLAPSAKQEALLPDFTPNPVLERFYRHLELKSKHPDAAVP
PLDETLKTITEADPDLLSEKKNAVDAFYKSFELKENPRLKKSSKRLLEKKPSGSDEDYQD
TTNALAVKPVKVEKIGDSSPVQDFEAMMSCRDSPDWVSKAIQDMKNKIYSLVENSYDGDN
HGKALECLLALRKGCILEQEPKQFNDFLHHLFNVRQEKKLRNFCESLIPKGLTLISKSEA
IDSEVTDDEARNFLVKKELKFE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaaggattggtgctgttactcgatgtcggtccaacaatgtacagt
gctcttcctgaaattaaaaaagtttgctccatgcttattcagaaaaagttgatttatgga
aaattcgatgaagttggagttgttgttttcgggactcaagagactgacaatgagctgacg
aaagaagtaggtgggtacgagcatgttgtcgtcttacgaaatatcaaagttgttgatgga
gatcttgttgatgcatttcaagagctccctcgaggaaactttgatggagattatcttgat
gctattgttgttggaatggatatgctgataaagaagtatcaagcaacaaacaaaggaaaa
aagcgtctgtgtcttattacaaatgcactgtgccctattaaagattcatgtgaagggacc
aaggaagatcaagtcaacactattgcggctcaaatgagtgcacatggaatgaaaatggaa
agtgttattgtgaggggaagattatgcgggggtggagaccaaagaataatggctgaaaat
gatcgactgctgaatcttttttcagcgaaaacatctgccagggcagtgtatgttgagggt
ccaactgcattgttaggtgcagttaaaactcgaaatatatctccagtaacaatattcaga
ggtgatcttgaacttgggtccaagatgaagattaaggtgtgggtctacaaaaaaacctca
gaggagaaatttcccactctgaagaaatattctgataaagcgcctccaactgacagattt
gcgacgcatgaagtcaaagtagattatgagtacaaaagtgtggaagatcctaataaggtt
gttcctccagaacaaagaattaagggttacagatatggaccacaagttgttccaatatca
tctgctgagtgggatgctgtcaaattcaaaccagaaaaaagcgtgaagcttctaggattt
actgatgcttcaaacataatgcggcactactacatgaaagatgtcaacgtctttattcct
gaaccaggcaatgcaagggctgctcttgcagtttctgctttagctagagcaatgaaggaa
atgaataaggttgcaattttgcgatgtgtctggagacaaggacaagggagtgttgttgtg
ggggttttgacacccaacatatctgagaaagacagcactcctgattcattttacttcaat
gtacttccttttgccgaggatgtccgggaatttcaatttccatctttcagcagttttcca
gcttcatggcagccgaatgagcagcagcaagaggctgcagataaccttgtaaagatgctt
gaccttgcaccatctgccaaacaggaagctctactgcctgatttcacaccaaatcctgtt
ctggagcggttttatcgtcatcttgaattaaagtcaaagcatccagatgcagctgtgcct
ccactggatgaaactctcaaaacaataactgaagctgatccagatcttctttctgaaaag
aaaaatgcagttgatgcattttataagagctttgaactcaaggagaatccaaggctaaag
aaatcaagcaagcggttattggagaaaaaaccctctggttctgatgaggattatcaagat
acaaccaatgctctagctgtcaagcctgttaaggttgaaaaaattggggattcaagtcca
gttcaagattttgaagcgatgatgtcatgcagagatagtccagattgggttagtaaagca
attcaggatatgaaaaataaaatatatagcctggttgagaattcctatgatggggataat
catggtaaagcattggaatgtctacttgcccttcgcaaaggttgcatccttgagcaggaa
cctaaacagttcaatgatttccttcaccatcttttcaatgtccgccaagagaaaaagctt
cgcaatttctgtgaatccctcatacccaaaggactcactttgatttcaaagtcagaagcc
atagacagtgaggttacagatgatgaagctagaaactttctggttaaaaaagagctgaaa
tttgagtga
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