Populus nigra (Lombardy poplar): 133681867
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Entry
133681867 CDS
T10372
Name
(RefSeq) serine/arginine-rich splicing factor RS41-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133681867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133681867
Spliceosome [BR:
pnz03041
]
Common components
Common spliceosomal components
SR proteins
133681867
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
Nup35_RRM_2
RRM_Nup35
RRM_5
DUF2129
Motif
Other DBs
NCBI-GeneID:
133681867
NCBI-ProteinID:
XP_061961021
LinkDB
All DBs
Position
2:44107930..44111483
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AA seq
270 aa
AA seq
DB search
MSSVILPPSQRQQGLLELTRRMKAIFCGNLDYDARQSDLERLFRRYGRIDRVDMKSGFAF
VYMEDERDAEDAIRRLDRAEFGRKGRRLRVEWTKQECESRRPAGSRRSLTNTTPSKTLFV
INFDPVHTRTRDLERHFDPHGKILSTRIRRNFAFVQYELQEDATKALEATDMSKFMDRVI
SVEYAARDDERRNGYSPERRDRDRSPDRNYNRERSPSPYRRDRGSPDSCHRSNTNSRPEP
RGNHNYDKAESPENERYRSRTPPSRERSRS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtgattctgcctccctcgcaaagacaacaaggtttgctggagttgacgagg
agaatgaaggctatattttgcgggaatcttgattatgacgcgcggcagtctgatttggag
cgtctttttagaagatatgggagaattgatagggtggatatgaagtctggatttgctttt
gtctatatggaggatgaaagagatgctgaggatgctatccgtaggcttgaccgggctgaa
tttgggagaaaagggcgccgtcttcgtgttgagtggactaagcaagaatgtgaaagtaga
aggcctgctggttcaagaagatcattgactaacacgactccatcaaaaactttgtttgtc
attaattttgatccagttcatacccgaactagggatctggagaggcactttgatcctcat
ggaaaaatattgagcacaaggattcggagaaattttgcattcgttcagtatgaattacag
gaagatgctacgaaggcattggaggcaactgacatgagcaagttcatggatcgggtcatt
tcggtggaatatgctgctcgagatgatgaaagaaggaatggttacagtcctgagagaaga
gatcgtgacagatctcctgacagaaactataatcgtgaacgatccccgagtccatatcgt
agagataggggcagcccggactcctgtcatagatcaaatactaattccagacctgaacca
agaggaaatcataattacgataaagctgaaagtcctgaaaatgaaagatatcgcagtcgc
accccaccatctcgagaaaggtctcgttcttga
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