Populus nigra (Lombardy poplar): 133681917
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Entry
133681917 CDS
T10372
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like
KO
K08775
breast cancer 2 susceptibility protein
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133681917
03460 Fanconi anemia pathway
133681917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133681917
03036 Chromosome and associated proteins [BR:
pnz03036
]
133681917
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133681917
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133681917
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
133681917
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
133681917
FA (Fanconi anemia) pathway
Downstream FA components
133681917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
133681917
NCBI-ProteinID:
XP_061961097
LinkDB
All DBs
Position
2:26627928..26634954
Genome browser
AA seq
1184 aa
AA seq
DB search
MSSWKIFSDSGNNFQWEVTGQIIHTKPEPKQSGALIPPSSSKTHLPSMADLLLQGCPKLL
ENGNAPIFRTGSGKSVALKQSSIAKALSVLRDDDDAGEACGGENELSFSKLRKKGNEDNG
NAPIFHTGSGKSVVLKQSSIAKALSVLGDDDGYSGNPGEVHGRNNECCFSNSLFHTGSGK
SVDISSAGLVRAKRLLGMEEENYSSNFQGFKCPRKSSTVNEQFGWQDVMHSGTKVSMKNN
GVIGDDLPAPRSSLVSKTVILESELTKEVNTNLLEPEIQKPPPIKFHTAGGRSLSVSSEA
LKRARSLLGDPDLGTFLNEGDAVDQGLSIFEGSGFGDASSNKENGFYSAFTHPRASSKHI
SKTFISPLKSSANHVQSSINPKNVISGSNLIKKFDAVHNDSICKVNNNTTYVQKPVRNGL
CTSATMVANSLDNITGSRMNSLQRTSSRMIPLHKSLCAPLPDISNTIGTAYSNNGQANGE
KRKLGRGISISPFKKPRSSKFTTPLNRNVSSVPSGLSTVSYESSGCRRKVSTRYPFQVPR
MYIKEYFGGHLSDKRLSEYFTDQVRQIKSNNADKYMFCDESGRDSIGAEAFYDMLLQSGA
LSQYASKEWVINHYKWIVWKLACYERCCPEKSAAKFLSVSNVLEELKYRYEREVNHGHRS
AIKRILEGDAPPSSMMVLCISSIYFGCEPKIEVPSVALDGAEHSNAAKLELTDGWYSVDA
LLDISLSMHLDAGKLFVGQKLRIWGAGLCGWAGPVSSFEALKTVSLSLHINGTYRAHWAD
RMGFCKGIGAPLAFRCIKSNGGPVPRVLVGVTRVYPVLYKDKLSNGSRTIVRSERMEAKL
VQLNNQRRSVIIEGIVSEFQRGMKSSNIYTDIDSEEGAKIFKILETSAEPEVLMAEMSPQ
QLASFASYQSKLEATRQLDMEKAIGKALQDAGLGEREVTPFIRVRVVGLTNYQEKGARAL
KEGLITIWNPTEKQKSDLVEGQAYAVAGLLPVSSDSNTLYLQARGSTTKWQPLSSLAMQQ
FQPFFSPRAPVLLSNLGEVPLCREFDIAALVLHVGDIYTAAQQKKQWVFVTDSSISRFDS
EDTSKSLLAISFCSPYMDNDSFTPINYNLAGSTIGLCNLIKRAKDQTYHLSIAEATENST
YSLNFDSSNFLHLKNAAASTQSWAKTSTSIINKLKERVLFIIGD
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtggaaaatattctccgactccggaaacaatttccaatgggaagtcaccggc
caaatcatccacacgaaacccgaacctaaacaaagcggagccctaatccccccttccagc
tccaaaactcacctcccttcgatggccgatctcttactccaaggatgtccgaaacttcta
gagaacggaaatgcaccgattttccgcacaggatcagggaaatcggttgcgttaaaacag
tcttcgattgcgaaagcgttatctgtcctcagagacgatgatgatgcaggtgaagcttgt
gggggagagaatgaacttagtttttcgaagcttcgcaagaaagggaatgaagataatggt
aatgcaccaattttccatacaggatcagggaaatcggttgtactgaaacaatcttcgatt
gcaaaagcgttgtctgttcttggtgatgatgatggatattctggcaatccaggtgaagtg
catggtagaaataatgaatgttgtttctctaattctcttttccatactggatctgggaaa
tcagttgatatatcttctgccggtttggttagagcgaagaggttgttgggaatggaggaa
gaaaattatagttctaattttcaaggatttaaatgtccaaggaaatcttccactgtcaat
gagcaatttgggtggcaggatgtaatgcattcagggacgaaagtcagtatgaaaaataat
ggggttattggtgatgatttgccagctcctaggtcttctttagtttctaagactgttatt
ttagaaagtgaattgacgaaggaggtcaatacaaacttgttggaacctgaaatacaaaaa
ccacctccaattaaattccatactgccggtggaagatccctatctgtttccagtgaggca
ttgaaacgtgcaaggagtcttcttggtgacccagacctaggaactttcttaaatgaggga
gatgcagttgatcagggcctctcaatttttgaaggtagtggatttggtgatgcttcatca
aacaaggaaaatggtttttactctgcttttacccatcctagagcctcaagtaaacatatc
tcaaaaactttcatttcacctcttaaatcatctgcaaaccatgtccagtcatctataaat
ccaaaaaatgttatttcggggagtaacttgataaagaaatttgatgctgttcacaatgac
agcatctgcaaagttaataacaacacgacttatgtacagaagcctgtaaggaatgggctc
tgtacatctgctacaatggttgctaattctctggataatattactggctcaaggatgaat
tcacttcaaaggactagctccaggatgataccacttcacaagtcattgtgtgcgccgttg
cctgatatttcaaatacaattggcacagcttactcaaataacggacaagctaatggagag
aagaggaaacttggaaggggaatttctatttctccatttaaaaagccccgcagttccaaa
ttcaccacccctttgaacaggaatgtctcatctgttcccagtggtttatctactgtatca
tatgaaagttccggctgtagaagaaaagtttccactagatatcctttccaggttcctaga
atgtatatcaaggaatactttggagggcatttatcagataagcgcctgtcggagtacttt
acagatcaagtaagacagatcaagtcaaataatgcagataagtacatgttttgcgatgaa
tctggccgagatagcattggagctgaagcattctatgacatgttgcttcagtctggagct
ttgtcacaatatgcttctaaagagtgggttataaatcattacaagtggatagtttggaaa
cttgcatgttatgagagatgctgcccagaaaaatctgctgcaaaatttttgtcagtctcc
aatgtgcttgaggaattgaagtacagatacgagagagaagtaaatcatggccatcgatct
gcaattaagagaattctggaaggggacgcaccaccttcttcaatgatggttctatgcatt
tcttccatctacttcggttgtgaaccaaagatagaggttccttcagtggcattagacggg
gctgaacatagtaatgctgcaaaactggaactgaccgatgggtggtattcagtggatgcg
cttctggatatatcactttcaatgcatctggatgctgggaaactgtttgtgggacagaaa
cttcgaatatggggagcaggattatgtggttgggctggtcctgtgtcatccttcgaggca
ttgaagactgttagtttgtcattgcatataaatgggacttatagagctcactgggctgat
cgaatgggattttgtaagggaattggtgctcctttggcttttaggtgcatcaagagtaat
ggcggtcctgtccctcgggtgttagttggagtcacacgggtttaccctgttctatacaag
gataaattaagtaatggcagcagaactattgtgagatcagagagaatggaggctaaactg
gtgcaattgaataaccagaggcgttcagttattatagagggtattgtttctgagtttcaa
agagggatgaaaagttctaacatatatactgatattgatagtgaagaaggagcaaaaata
tttaagattcttgagacgtcagctgaaccagaagtcctaatggcagagatgagtccacag
caactagcatcatttgcctcttatcaatcaaaactagaggcgacaaggcaactggacatg
gagaaagcaattgggaaagctttacaagatgctggcttaggggagagagaagtgacccca
tttattagggtcagggtagttgggttaactaattatcaagaaaagggcgcccgcgccctt
aaagaaggcttaataacaatttggaacccgacagagaagcagaaaagtgatcttgtcgag
gggcaggcttatgctgtagcaggactattacccgtgagttctgattcaaatacactttac
ttgcaagcaagaggatctacaaccaaatggcaacctttatcttccctggcaatgcaacag
tttcagccatttttcagccctcgagcaccagtattattgtcaaatttgggtgaagttcct
ctttgtcgtgaatttgacattgctgcacttgtgttgcacgtgggagatatttatacagct
gctcagcaaaagaaacagtgggtgtttgtgactgatagctccatttctagatttgattca
gaggatacgtcaaagtccttactggccatcagcttctgctcaccatacatggataacgat
tcatttacaccaatcaactacaatcttgctggatccacaattggcttgtgtaatctcatc
aagagagcaaaggaccaaacatatcatctctcgatagctgaagcaacagaaaattcgacc
tattctttgaattttgattcctccaattttttgcaccttaaaaatgctgctgcctctact
caaagctgggccaagacctctacctcgattattaataaacttaaggaaagggttttattt
attattggtgattga
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