Populus nigra (Lombardy poplar): 133681927
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Entry
133681927 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133681927
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133681927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133681927
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133681927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Beta-prop_WDR36-Utp21_1st
Clathrin
TPR_VPS8_2
Beta-prop_EML_2
Beta-prop_WDR5
WD40
Beta-prop_EML
Beta-prop_WDR3_1st
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_Aladin
Beta-prop_HPS5
WD40_Gbeta
zf-RING_Vps41
Beta-prop_THOC3
WD40_Prp19
Beta-prop_TEP1_2nd
zf_RING_Vps8
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133681927
NCBI-ProteinID:
XP_061961114
LinkDB
All DBs
Position
2:complement(41910417..41921694)
Genome browser
AA seq
1930 aa
AA seq
DB search
MTKKLTSTKLSMELDLDSFLNSHSTSDSDTDNTSVPHRTLDEILNDSDSSSPPSSPPSIK
QSDLPPSHLQHAVSLDSSTQSQIIQDQLKPTSLTRITNSPWRLPPPSSRQLPSLFGGVRS
NAKPGAALAAAAAASRSVPTPHAAAIKSRRLSSGSGTFQTILDIAESGSSGGGDHEIVSN
SSNGDSIERFQSQSEDKMGGLFQSATAENAIPKTEEDLKISRESEGEPVFQIEGEVRLSD
DSGQDMLHNTGSTSNSDANLNLDDENAASVSKDKFVEVSDSSEVDIINLNNVDSFKDEAL
KGEGNNLEENIDEVKDDGVGVFTIGDGDDASSMSDISELVEERIEQLESEMISKRAEKKR
KSSLKPLELAEELEKKMAYTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDSHNVITQTV
GSQTFRRDHGSPQVLAVHLNYIAVGMSKGVIVVVPSRYSSHNDDNMDAKMLMLGLQGDRS
HAPVTSMCFNQQGDMLLAGYGDGHITVWDVQRASAAKVITGEHTAPVVHAFFLGQDSQVT
RQFKAVTGDSKGLVLLHAFSVVPLLNRFSFKTQCLLDGQRTGTVLSASPLLLDESCGGAL
PATQGNSSASSTSISSMMGGVVGGDAGWKLFNEGSSLVEEGVVIFVTHQTALVVRLSPSL
QVYAQLSRPDGVREGSMPYTAWKCTTQSHSSSPDNVPEHVAERVSLLAIAWDRKVQVAKL
VKSELKVYGKWSLDSAAIGVAWLDDHMLVVLTLTGQLYLFAKDGTVIHQTSFAVDGSRGD
DLAAYHTHLINIYGNPEKAYHNCIGVRGASVYILGPTHLIVSRLLPWKERIQVLRRAGDW
MGALNMAMTLYDGQAHGVVDLPKSVDAVKEAIMPYLVELLMSYVDEVFSYISVAFCNQIG
KAEQQDDSKTGSNSVHSEIKEQFTRVGGVAVEFCVHIQRTDILFDEIFSKFVLVQHRDTF
LELLEPYILRDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCRE
HGLYGALVYLFNKGLDDFRTPLEELLVVSRTSQQETAAALGYRMLVYLKYCFLGLAFPPG
HGALPVTRLSSLRTELVQFLLESSDASNPQAVSRGTYLNLYHLLQLDTEATLDVLRCAFL
DGENLKREFSMQDGADTSMEAKQENNIMAESQNLWIQNTINALVQITEKHISRADESAVD
NVDTRFVDTWPSKKDLENLLEFIAYHVACRKAHVSKVVLSQILEYLTSESTVPPSVPAHI
IETSKEREKQVLALLEVVPETDWNESYVLQLCEKAHFHQVCGLIHTIRHQYLAALDSYMK
DVDEPIHTFAYINNMLEKLGDNDSGAFRSAVISRIPELLVLSREGTFFLVTDHFRAESPH
ILSELRSHPQSLFLYLKTVIEVHLSGTLDFSNLKKADDIDVADGRRVKDQSKGLTAYLER
ISDFPKFMRNNPVHVNDDMIELYFELLCQFERNSVLRFLGTFDSYRVEHCLRKCQEYGII
DAAAFLLERVGDAGSALLLTLSGLNDNFPELESAVESVVSDMSVSASSDHYSTVLKLKEV
DNIRSILNACIGLCQRNTPRLQPEESEMLWFRLLDSFCVPLMDSYSDRRASKAKNYGGVL
GEVLGSQEDDGAWVIKWKISRSCKGAHSLRKLFSMFIKEIVEGMIGYIHLPTIMSKLLSD
NGSQEFGDFKITILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSTVC
CICNCPLAKNSSFRIRVFSCGHATHLDCELENESSSRGHLSGCPVCLPKKNTQRGARNKS
ALPENGLVNKVSARPRRAHGTSILHPHEDLLENSHGLQQISRFEILSSLQKDKKLVQIES
MPQLRLAPPAVYHEKVKKGPDLLTGESSSALAEVEKPGKRRQPRELKLKGSSLRFPLKSS
IFGKEKTNKG
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atgactaagaaactaacgagtaccaaactctctatggaactcgaccttgactccttcctt
aattctcattccacctccgattctgacaccgataacacctccgtccctcaccgtactctc
gatgaaattctcaacgactccgattcctcttcccctccttcatccccaccctccatcaaa
caatcagatctccctccctcccacctccaacacgccgtctcactagattcctccacacaa
tcacaaattatccaggatcaattaaaacccacttcacttactcgaattactaattcaccg
tggcgccttcctcctccgtcttctagacagttgccatcgcttttcggtggagtgagatcg
aatgcgaagccaggggcagcccttgcagcggcagctgctgcctctcgttctgttccgaca
ccgcatgccgccgcgatcaaatccaggagattgagcagcgggagtggaaccttccagacg
attctcgatatagcagaatcaggctccagtggtggtggcgatcatgaaattgtgtcaaat
tcatcgaacggagactcaattgaaagattccagtcccagtcagaggataagatgggtgga
ttatttcaatctgctacagcagagaatgcgattccgaagacagaagaggatttgaagatt
tcacgtgaaagtgaaggagagccagtttttcaaatcgagggggaagtacggctcagtgat
gatagtggtcaagatatgttgcataatactggttcgacctcgaattctgatgctaactta
aatttggatgatgaaaatgcagcttctgtttctaaagataaatttgtggaagtgagtgat
tcgagtgaagtagatattattaacttgaataatgttgattcctttaaagacgaggcgttg
aaaggagagggaaataatttggaagaaaatatagacgaggttaaagatgacggggtaggt
gtttttactattggtgatggtgatgatgcaagttcaatgagtgatatttcggagcttgta
gaggagagaatcgagcaactggagagtgagatgattagtaaaagggcggagaagaaacgg
aagtctagtctgaagccgcttgaattggcagaagaactcgagaagaaaatggcctatact
ggattgcattgggaggagggtgcggctgctcagcctatgagacttgagggtgttcggagg
gggtcaactactttaggatattttgatgttgattctcataatgttattacacaaactgtt
ggttcccaaacatttaggagagatcatggttcacctcaagttttggctgttcatcttaac
tacattgcagtaggaatgtcaaaaggtgtcattgttgttgtccctagtagatactcttct
cataatgatgataacatggatgcaaagatgctaatgcttggtttgcaaggtgatcgatct
catgccccagtgacttccatgtgctttaatcagcaaggagacatgctcttggctggttac
ggagatggtcacattactgtttgggatgtccagagggcatcagcagcaaaagttattact
ggggagcatactgcaccagttgtgcatgcattctttctgggccaggattctcaagttact
cgtcagtttaaagcagttactggtgatagcaagggtctggttctgctacatgctttctca
gtggttcccttgcttaacaggttctcgttcaaaacacagtgtcttcttgatggacaaaga
acgggcactgtgttatcagcttcaccccttcttcttgatgaatcttgtggaggtgctttg
ccagccacacagggaaattcttcagcatcatccaccagcattagtagcatgatgggtggt
gtagttgggggagatgcaggttggaaactattcaatgagggctcttctttggttgaagaa
ggtgtggtcatatttgtcactcatcaaactgctttggtggttaggctcagtcccagttta
caggtatatgcacaactttctaggccagacggagttcgagagggttccatgccttacact
gcatggaaatgtaccacacaatcacacagttcatcacctgacaatgttccagaacatgtg
gcagagagagtctcattgctcgcaattgcctgggatcgaaaagtgcaagtggcaaaattg
gtcaaatctgagttaaaagtttatggaaaatggtcccttgacagtgcagccataggtgtg
gcttggttggatgatcatatgctggtggttctcacgttaacaggacaactatatttgttc
gcaaaggatggcactgtgattcaccaaactagttttgctgttgatggttctaggggagat
gatctagctgcatatcatacacacttgatcaatatctatgggaaccctgagaaagcttat
cacaattgtataggtgtaaggggagcttctgtgtacatacttggaccaacacatcttatt
gtttcccgccttctcccatggaaagagcgtattcaggttctgcgaagagcaggtgactgg
atgggtgccttgaacatggcaatgacactttatgatggccaagctcatggtgttgttgac
cttcctaaatcagtagatgctgtaaaggaagccataatgccatatctggtagagttgctt
atgtcatatgtagatgaagtattttcttatatctcagtggctttttgcaatcaaattgga
aaagcggaacaacaagatgactcaaagactggaagcaactcagtgcactctgaaataaaa
gaacagttcacacgtgtcggtggtgttgctgtagaattctgtgtccatatacagcggact
gacatcctttttgacgaaattttctctaaatttgtccttgttcaacatagagatacattt
ttggagcttttggagccatatatattgagggatatgctggggtctctaccccctgagatt
atgcaagccctagtagagcattacagtagcaaagggtggttgcagcgagttgagcaatgt
gtccttcacatggacatttcctccttggattttaatcaggttgtcaggctatgccgggag
catgggttatatggtgccttggtgtatcttttcaataaaggattagatgatttcaggaca
cctttagaggagctattggttgtttcaagaactagtcaacaagagactgctgctgccctt
gggtacaggatgcttgtttatctgaagtactgctttttaggtctcgcctttccaccagga
catggggctcttcctgtcacacgtctgtcatctcttaggaccgaacttgtgcagtttttg
ctggagagttccgatgcctctaatccacaggcagtgtcaagaggaacatacctgaacctg
tatcatctcttacagttagatactgaagcaactttagatgttttgaggtgtgctttttta
gatggtgaaaatctgaaacgtgagttctctatgcaagatggtgctgacacaagtatggag
gctaagcaagaaaacaatattatggctgaaagtcagaatttatggattcagaatactata
aatgctcttgttcaaattaccgaaaaacatatatcccgagcagatgagtctgctgttgat
aatgttgatactcgatttgtggatacatggccctcaaagaaagacttagaaaatctgctt
gaattcattgcataccatgttgcatgtaggaaagctcatgtttcaaaagttgtgctgagt
caaattttggagtacctgacatcagaaagtactgtcccaccaagtgttcctgcacacatc
attgaaacttcaaaggagagagagaaacaggtgcttgcacttctggaagtggtgcctgag
actgattggaatgagtcttatgtgttacagctatgtgagaaagcacactttcaccaggtt
tgtggcttaattcataccatcagacatcagtatcttgctgccttggatagctatatgaaa
gacgtagacgaacccattcatacttttgcctacattaacaatatgttagaaaagctgggt
gacaatgatagtggtgcttttcgatcagctgtgatttctaggattcctgagttgcttgtc
ttaagcagagagggaacattcttcttggtcactgaccattttcgtgctgaaagtccacat
atcctctctgaattacgctctcatccacagagtctttttctgtatttaaagactgtcatt
gaggttcatttgtctggaaccttagacttttctaatttaaaaaaagctgatgatatagat
gttgctgatggaagaagggtgaaagatcagtcaaaaggactcacagcttatctggaaagg
atctctgattttcctaagttcatgcggaataatcctgttcatgtgaatgatgatatgatt
gagctttattttgagctattatgtcagtttgagcgcaattcagttctcagattcttaggg
acttttgatagctaccgggtggaacattgtttacgcaagtgccaggaatatgggataata
gatgctgctgcctttttgttggaaagggttggtgatgctggaagtgctcttttactcaca
ctttctggtctcaatgataattttccagagctagagtcagctgtggaaagtgtggtttca
gatatgagtgtttctgccagtagtgatcattacagcactgttttaaaattgaaagaggtg
gacaacatacgcagtatattaaatgcctgtattggattatgccagcggaacacccctcgt
ttacaacctgaggaatctgagatgctctggttcagattacttgactcgttctgtgtgcct
ttgatggattcctattcagatagaagggcatcaaaagcaaagaattacggtggagtgctg
ggtgaagttctgggctcccaagaggatgatggggcatgggtaatcaagtggaaaatctcc
agatcttgcaaaggtgctcactccttgaggaaattgttttctatgttcatcaaagagatt
gtcgaggggatgattggatacattcaccttccaactatcatgtcaaaactcctctctgat
aatggtagccaggaatttggtgatttcaaaattacgatactggggatgcttggaacatat
ggctttgaaagaagaattctggatactgccaaatccttgatagaggatgacacattttac
accatgagcttactaaagaagggggcgtctcatggctatgctccccgaagtactgtatgt
tgtatatgcaactgcccacttgcaaagaattccagtttccgtattcgagtttttagttgt
ggtcatgcaactcatcttgattgcgaacttgaaaatgagtcatcaagtaggggccactta
tccggatgtcctgtttgcttgcctaagaagaatactcaaaggggggctagaaacaaatca
gcacttccggagaatggtttagtgaataaggtttccgcgagaccacggagagcacatgga
actagcattttacacccacatgaagatttgttagagaattcccatgggcttcagcaaata
tcacggtttgagatcttgtctagtctccaaaaagataagaaattagtacagatagaaagc
atgcctcagctgaggcttgcaccacctgctgtttatcatgaaaaggtgaagaaaggacct
gatcttttaacaggagagagtagcagtgctcttgcagaagtcgagaaaccaggcaaaagg
aggcaacccagagagctaaaactgaaagggtcatctctccggttcccactaaaatcaagc
atattcggcaaggagaagacgaacaaaggctga
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integrated database retrieval system
