Populus nigra (Lombardy poplar): 133681970
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Entry
133681970 CDS
T10372
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133681970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133681970
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133681970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
133681970
NCBI-ProteinID:
XP_061961166
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All DBs
Position
2:45831457..45836917
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AA seq
1209 aa
AA seq
DB search
MMDYTLPISKRTRLREAEVYKKLHDEIRKGRNQGKESNAAATGSTNGLNGAQEESVGGLS
YKGSKSPVVLDDSEDDAFLDDCEKGGLEEGLDVVSLDDSDDDDQSEGVESKSFDVGGKKS
GGTDVGGSCSGVKSDEEESGRSKVPLPRWQRIVNESYNGDVFAHERNEGGVCFLSSGIGN
GSGGVGLKARESNGVAGRTELQSGFCEKKKDGNVIVVVDDDDDACIILEKDAEELQSSSS
GEEETFKDDSDDDDHRVELPESFMVEEEEKEEDGDREQGEMELKRNKVYGIEVLCDSDIG
KFENNDVDMDDSLCVAKRTRSHYNLESAKKRMKLETVSRPLCVDEEKLDDNGDNDEDDTE
AYEAVDVAQKVRSKKGKTKPTGGNGGDVDDGDEACDHKSQRRTIESREGSRDEHGHGVCR
RKPSKRRRKEYEVVKILANSIFLDLEDVPFKEEREPLEEPVLPLKFTFGIEESSPPVKSE
EEKQLEELWADMALALCLKDTTDDAALDENEDDAHEVEPDTVTLCHQGNHELYLDEEIGL
LCKYCSFVDLEIKYYVPPFDRYPKGKSARRDFVTMQHNIFNDLHHQDSGHDTHPDYDPCT
LVQGTVWNLIPGIGKGMHGHQREGFEFLWKNIAGGIYLDKLKENANLNGGTGCIISHAPG
TGKTRLTIVFLQTYMQLYPTSRPVIVAPCSMLLTWEAEFLKWGVDIPFHIMNKKNLSGKE
NRTAMDLFRELKPAERGLNAIRMVKLYSWKKERSILGISYRLFEELVGEEKSKTKVSDKT
EDDQVRKVLLELPGLLVLDEGHTPRNDRSRIWKALSKVQTQKRIILSGTPFQNNFDELYN
TLCLVKPKFADEISSKHHRAFPKRRGCKRNTDARRNWASLTTAIGKVTDDKLEAQRVEEL
RKMIWQFVHVHKGGVLRERLPGLRDSVVILQPVHLQKTLLENVKQINGLDHFEMEYLLSV
LSVHPSLLPEKSVGTLEFKFVDRMELEMLRSKPEAGVKTKFLMELIRLCQARNEKVLVFS
QYLEPLNLVIKQLESNFSWIQGEDILYMHGKLKIDERQILIKHFNNANSNAKVLLASTRA
CSEGINLVGASRVVLLDVLWNPSVERQAISRAYRLGQEKVVYIYHLITSGTMEEEKYFCQ
VEKERLSNLVFDCTNRSSSHQKGVFDIAEDKKDKILEEMVQHDKLKLMFKKIVYQPKDTN
IVKSFDLDL
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgatggactatacattgcctatatctaaaaggaccaggcttagagaagctgaagtgtat
aagaaattgcatgatgagattaggaaagggagaaaccaagggaaggaaagcaatgctgcc
gctaccgggtcaacgaatggacttaatggtgctcaagaggaaagcgttggcgggttgtct
tacaagggaagtaagagtccagttgtcttggatgatagtgaagacgatgcctttttggat
gactgtgaaaagggggggcttgaggaagggttggatgttgtttcccttgacgatagtgat
gatgatgatcagagtgagggagtagagagtaagagttttgacgttggtggtaagaagagt
gggggaacagatgtgggtggaagttgtagtggcgtgaaatctgatgaagaggagagtggg
agatcaaaggttcctcttcctcgttggcagagaattgtgaacgagagttataatggtgat
gtttttgcgcatgagaggaatgagggtggcgtgtgttttttgtcgagtggaattgggaat
ggaagtggtggggtcggtttgaaggcgagggagagtaatggggtagccggaaggactgag
ttgcagtccgggttttgtgaaaagaagaaggatggtaatgttattgttgttgttgatgat
gatgatgatgcttgtattattttggaaaaggatgcagaggaattgcagagttcttctagt
ggagaagaggaaacctttaaagatgattcagatgatgatgatcatagagtggagttaccg
gagagttttatggttgaggaggaagagaaagaagaggatggtgatagggagcaaggtgag
atggaattgaagaggaacaaagtttatggaattgaagtgttatgcgactctgatattggt
aaatttgagaataatgatgtcgacatggatgattctctttgtgtggcaaaacgtacccga
tcacattataatttggaatcggctaagaagagaatgaagcttgaaacagttagccgacca
ctttgtgttgatgaggagaagttggatgataatggtgacaatgatgaagatgatactgaa
gcctatgaagcagttgatgttgctcagaaagttcggtctaagaaaggaaaaactaaacca
acaggagggaatggtggtgacgttgatgatggtgatgaggcttgtgatcataagtctcag
agaaggacaattgagtctagagaaggcagtagagatgagcatgggcatggtgtatgtaga
aggaagcctagtaaaagaaggcgaaaagaatatgaagttgtcaaaattcttgcaaattcc
atttttctggacctggaagatgtgcctttcaaagaagaaagggaaccactcgaggagcca
gttcttcctctgaagttcacatttggaattgaagagtcaagtcctccagttaaatcagaa
gaggagaaacaattggaggaactttgggctgacatggccttagctctttgcttaaaggac
accactgatgatgcagcgctggatgaaaatgaagatgacgcccatgaggttgaacctgat
acagtcaccctttgtcatcaggggaatcacgagctttatcttgatgaagaaattggactt
ctatgcaaatattgctcttttgtggatttggaaatcaaatactatgtgcccccttttgat
agatatcctaaggggaaatcagctaggagagactttgtgacaatgcaacacaatatcttc
aatgatctccatcaccaagattctggtcatgacacacatcctgattatgatccttgcact
cttgtgcaaggcacagtgtggaacttaattcctggtattggaaagggtatgcatggacat
cagcgtgaaggctttgagtttctgtggaaaaacatagctggaggtatttatcttgacaag
ctgaaagagaatgctaacttaaatggtgggacaggatgcattatatcccatgctcctggg
actgggaaaacccgcctaaccatagtgtttctccagacatatatgcaattatatccaaca
agcaggcctgtaatagttgctccttgtagcatgctccttacatgggaagcagagtttttg
aagtggggggttgacattccctttcacattatgaacaagaaaaatctttctggaaaagaa
aataggacagctatggatcttttcagggaacttaaacctgcagagcgtggtttaaatgcc
atccgtatggtgaaattatattcttggaaaaaggagaggagtatcctggggatcagttac
agactttttgaagaacttgttggtgaagaaaagagtaaaaccaaagtatcagataagact
gaagatgaccaggtaaggaaagtcctccttgaacttcctggtcttttagtccttgatgaa
ggacatacacctcgaaatgacaggagtcgtatctggaaagctttgtcgaaggtccaaaca
caaaaacggattatactctcaggaacacccttccaaaataactttgatgagctttataac
acactgtgcttggtaaagcctaaatttgcagatgagatctcgtccaaacaccatagagct
tttcctaaaaggcgtggttgcaagagaaatactgatgcgagaaggaattgggcctccttg
acaactgcgattggcaaagtcactgatgataaactggaagctcagagggtcgaagagctt
agaaagatgatttggcaatttgtgcatgtacacaagggtggtgtgctacgagaaagactc
cctggattgagggactctgtggttatcttacagccagtccatttgcagaagacccttctt
gaaaatgttaagcaaattaatggcctggatcattttgagatggaatatttgttgtctgtg
ctttctgtacacccttctctgttgccagagaaatcagttggaaccctagagtttaagttt
gttgatcggatggagttagaaatgcttagatcaaaacctgaggctggagtaaaaacaaaa
tttcttatggaactcattcggctttgccaggcgaggaatgagaaagttctggtgttcagt
caatatcttgagccactgaacttggtaatcaagcagctggagtcaaatttcagttggatc
caaggagaagatatattatatatgcatggaaagcttaaaatagatgaacgtcaaatatta
attaagcattttaacaatgcaaatagtaacgcaaaagtgttgctcgcatcaactagagct
tgttctgaagggataaatcttgttggtgcttcaagagtggttttgcttgatgttttgtgg
aacccatcggtggaaaggcaagccatcagccgcgcctacaggctagggcaagagaaagtt
gtctatatttaccatctcattacttcaggaacaatggaagaggaaaagtatttttgccaa
gttgagaaggagcgattgtcaaacctagtgtttgattgcacaaacagaagtagcagtcat
cagaagggtgtatttgatatcgcagaagacaaaaaagacaaaattctggaagaaatggtt
cagcatgacaagcttaaactcatgtttaaaaaaatcgtataccaaccaaaagatactaat
atagtcaaatctttcgacttggatttgtaa
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