Populus nigra (Lombardy poplar): 133682311
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Entry
133682311 CDS
T10372
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133682311
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133682311
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
Motif
Other DBs
NCBI-GeneID:
133682311
NCBI-ProteinID:
XP_061961580
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Position
2:complement(48583402..48589740)
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AA seq
675 aa
AA seq
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MEKVDASLSRWLTLLIWFFFIVKLAAASRKIFQSENGKSLGVRLHKHHHRMVVDNGLVQV
TLSSPGGDITGIQYNGIHNVLETRNREGNRGYWDVVWNLPGNHIAYDRLKGTDFNVIMED
EDQVELSFKKSWNFTNGNSSAPLNVDKRYIMRRGSSGVYLYAILERLEGWPDMDMDQIRI
VFKLQNDKFHFMAISDDRQRIMPMPRDRISGEPLAYPEAVLLTNPTNPQLGGEVDDKYHY
SCENKDNRVHGWISENPTVGFWMITPSDEFRAGGPLKQDLTSHVGPTVLSMFTSTHYSGK
DLNTKYRNGRPWKKVLGPVFVYLNSISSLEDPTTLWEDAKDQMSIEVNSWPYNFPQSEDF
PSSDRRGTVSGQLLVGDKYISDKPMWASYAYVGLAAPGGVGSWERDAMGYQFWVQANEEG
HFLIENIRAGHYNLYAWVPGIVGDCRYDVIIHIQPGCDVKLGVLVYEPPRNGPTLWEIGI
PDRTAAEFFVPETYPTLMNKLFINQSTHKFRQYGLWERYSDLYPKHDLIYTIGISNYHQD
WFFAQVPRNMGNHTYQATTWQIKFEIENATPRTGNYTLQVALASASASELQVRFNDRRAK
RPHFRTRLIGRDNAIARHGIHGLYWFYSINVPSRLLRQGNNTVYLTQSRSKSPVGGIMYD
YIRLEGPPETGQSVE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagtcgatgcttctctttcgaggtggttaacattgttgatttggttcttcttc
attgtcaagctcgccgctgcttcaaggaaaattttccagagtgaaaacggtaaatctctt
ggggtgcggctgcataagcatcatcatcggatggtggtggataatggccttgtacaagtc
actttgtctagtccgggcggtgatatcaccggaatacagtacaacggaatccataatgta
cttgaaaccaggaacagggaaggcaaccgagggtattgggacgttgtctggaacttgcct
ggaaatcatatagcttacgacagattgaaaggaacagattttaacgttataatggaagat
gaagaccaagtagaactctcattcaagaagtcttggaatttcacaaatgggaactcctca
gcccccctgaacgtagacaaaaggtatattatgcgacggggcagctcaggggtttacttg
tatgccatattagaacgcctagagggatggcctgacatggacatggatcaaattagaatc
gttttcaagctccaaaatgacaagtttcacttcatggcaatatctgacgacaggcaaagg
atcatgccaatgcctcgagacagaatcagtggtgagcctcttgcatatccagaagctgtt
ctcctgaccaatccaactaatccacagcttggaggagaggtggacgacaagtatcattat
tcatgtgagaacaaagacaacagggtacatggttggatatcagaaaatccaacggtggga
ttttggatgatcacaccaagtgatgagttccgggccggtggtcccctgaaacaagacctc
acatctcatgtcggccccaccgtcctctctatgtttaccagcactcattacagtgggaag
gacttgaacacaaaatatcgaaacggaaggccatggaaaaaggttctaggaccggtattt
gtctatctcaactccatctcctcccttgaagatcccacaacactatgggaagatgctaaa
gatcagatgtctatagaagtcaacagctggccttacaatttcccccagtcagaagatttc
cctagctccgatcgacgaggaactgtttctggtcaattactagttggtgacaagtacatc
agtgacaaaccaatgtgggcgagctatgcctatgtgggcttggctgcaccaggaggggtg
ggttcgtgggaaagagacgccatggggtatcaattctgggttcaagccaatgaggagggt
catttcttaattgaaaacattagagctgggcactataatctgtatgcctgggttcccggc
attgttggggattgcagatatgatgttattatccacatccaaccaggatgtgatgtcaaa
ctgggtgttcttgtgtacgagcctccaagaaatggtccgaccctttgggaaataggaatc
cctgaccgcaccgctgccgaattctttgtgcccgagacatacccgacgctcatgaacaaa
ttgttcatcaaccaatcaactcacaagtttaggcagtatggactatgggaaaggtactca
gatttgtatcctaagcatgaccttatttacactattggcatcagtaattatcatcaagat
tggttctttgctcaggttcccaggaacatgggaaatcatacatatcaagccacgacatgg
cagatcaaattcgagatagaaaatgccaccccgaggactggaaactatacactccaagtg
gccttggcatcagcctcggcttctgaactacaggttcggttcaatgacagacgagccaaa
agacctcatttcagaacaaggctaataggaagggacaatgcaattgcccggcatggaatt
catggtctgtactggttttatagcattaacgtgccaagccgtctgcttcgccaaggaaac
aacactgtatatctcactcagtcaagaagcaaatcccctgttggaggaattatgtatgat
tacattcgtttagaagggcctccagaaacgggtcagagtgtagaatga
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