Populus nigra (Lombardy poplar): 133682684
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Entry
133682684 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133682684
KO
K12589
exosome complex component RRP42
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133682684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133682684
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133682684
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
133682684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133682684
NCBI-ProteinID:
XP_061962140
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All DBs
Position
2:36953427..36956234
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AA seq
287 aa
AA seq
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MVGLSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASV
KAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELSTELSVALQRCLLGGKSGAGA
GIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGD
EQPEVDISDEEFLQFDTSGVPVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQIC
GLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEISAAEADEDEM
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtaggcctttctcttggtgaaaagcatttcatacagggtggtattgatcaaaacctc
cgctctgacggcaggaaaagagatgcttaccgacctatttctattgaaactggggttatc
cctcaggcaaatggctccgcacgaatcaggataggtgcaacagaggttattgccagtgtg
aaggctgagcttggaagaccaaatgcattgcaacctgataaaggaaaagttgctatattt
gttgattgtagtccagttgcagaaccaatgttcgagggcagagggggtgaggaactgtcc
acagaactctcagttgctcttcagcgttgtctcttgggtggtaaaagtggagcaggggct
ggaattgatctatcatctttaatagtcgcagaaggaaaaatttgttgggatctttacatt
gatgggcttgtcatcagttcagatggaaatcttcttgatgctctaggtgctgccatcaag
gctgccttaagcaatacaggcatcccaagagtccaagttgcagccggtgcatcaggagat
gagcaaccagaggttgacataagtgatgaagaatttttgcaatttgacacttctggggtc
cctgttatagttactctaacaaaggtggggaggcactacattgtagacgccacttcagaa
gaagagtcccagatgagctctgctgtctctgtttctatcagtaggaaagggcaaatttgt
gggctttccaaacgaggaagtgcaggtcttgatccgagtgttatttctgacatgatttcc
gtggctcgtcacataagtgagcagctaattaataaattggactctgaaatatctgctgct
gaagctgatgaagatgaaatgtga
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