Populus nigra (Lombardy poplar): 133682837
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Entry
133682837 CDS
T10372
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133682837
09123 Folding, sorting and degradation
03018 RNA degradation
133682837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133682837
03041 Spliceosome [BR:
pnz03041
]
133682837
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133682837
mRNA cycle factors
Stress granule specific factors
133682837
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Complex C specific factors
133682837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_3
RRM_RdRP1_2
RRM_7
RRM_MARF1
SET_assoc
GH97_C
Motif
Other DBs
NCBI-GeneID:
133682837
NCBI-ProteinID:
XP_061962357
LinkDB
All DBs
Position
2:complement(47468226..47474613)
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AA seq
651 aa
AA seq
DB search
MAQIQLHQSGASVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSV
RVCRDLSTRRSLGYGYVNYTNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMAN
IFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLN
GMLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDEDLKNIFAEHGAITSAV
VMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFE
QSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAF
STPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPM
YPPGAPGMGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQ
RPGGRRGGGPVQQTQQPVPLMQQQMLPRGRVYRYPPGRNMPDVPMPGVAGGMLSVPYDMG
GMPIRDAAQPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNQADQLGSLSLNDNLVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcagttgcatcaatcgggggcttcggtaccgggacccaacggagtggcg
gcgggacctggagcgatccagtttgtgccgacttcgctttatgttggtgatcttgacttc
aacgtgactgattctcagctttacgacgtgtttaatcaggtcggccaggtggtttcggtt
agagtttgtagggatttgagtaccaggcgatctcttggctatggttatgttaactatacc
aaccctcaggatgctgcaagggcattggatgtcttgaactttactccactcaataacaag
cctatcaggatcatgtattcccatcgggacccaagtattcgtaagagtggcatggcaaat
atatttatcaagaacctggacaagggtattgatcacaaagctttacatgacacattttct
tcatttggcaatattctttcttgcaaagttgctactgatgcttctggccagtccaaaggc
tatggttttgtacaatttgacagcgaggaggctgcacaaaatgcaatagataaattaaat
ggcatgttggtcaatgataaacaagtttatgttggacactttcttcgcaaacaggacaga
gatggtgctctatatagcataaaattcaacaatgtttttgtgaaaaatctggctgaatcc
acaacagatgaagacttgaagaatatttttgctgaacatggagcaattactagtgctgtg
gtgatgagggatgctgatggtaaatcaaaatgttttggatttgttaactttgaaagtgca
gatgatgctgccaaagctgtcgaggctcttaatggcaagaaaatcgatggtgaggagtgg
tatgttgggaaagcccagaaaaagtctgaaagagagcttgaactgaaagggcgatttgag
cagagtatgaaggagactgttgacaaatttcaaggcttgaatttgtatatcaagaatcta
gatgatagcatcaatgatgaaaaactcaaggaattgttctctgactttggtgctattact
tcgtgcaaggtcatgcgtgaccctagtggtattagcagaggttctggatttgttgccttc
tcaactcctgaagaagcatctcgagctcttgcagagatgaatggaaaaatgttgatcagc
aaacccctgtatgttgcccttgctcaacggaaggaagagagaagagcaagacttcaggca
caattttctcaaatgaggccagttaccatggcaccttcagttgcttctcgtatgccaatg
tatcctcctggtgctccaggtatgggacaacaatttctgtatgggcaaggacctccagcc
atgatgcctccccaggctggatttggctaccaacagcaacttgtcccgggaatgaggcct
ggtggtgccccaatgccaaatttctttgttcctctggttcagcagggtcagcaaggccag
cgacctggagggcgacgtgggggtggtcctgttcaacagacccagcagccagtccctctc
atgcagcaacagatgcttccgaggggacgcgtgtatcgttacccaccaggtcgcaacatg
ccagatgtaccaatgccaggtgttgctggaggcatgctttctgttccttatgacatgggc
ggcatgccaatacgtgatgccgcacaacccatgcccattactgctttagctactgccctg
gcaaatgcaacacctgaacagcagaggacgatgctgggtgaaagtctataccccatagtg
gatcagcttgagcatgattcagcagccaaggttacaggcatgcttctggagatggatcaa
actgaggtgttgcaccttcttgagtcaccagaggctttgaaggcaaaagtggcagaagct
atggaggtccttaggactgtagctgctcagcagcagatcaacaatcaagcagatcagctt
gggtcgctgtctctgaatgacaatcttgtctcttaa
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