KEGG   Populus nigra (Lombardy poplar): 133687853
Entry
133687853         CDS       T10372                                 
Name
(RefSeq) UBP1-associated protein 2C-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133687853
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133687853
   03041 Spliceosome [BR:pnz03041]
    133687853
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     133687853
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     133687853
Spliceosome [BR:pnz03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    133687853
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Nup35_RRM_2 RRM_3 Cut8
Other DBs
NCBI-GeneID: 133687853
NCBI-ProteinID: XP_061963172
LinkDB
Position
3:7603618..7608062
AA seq 340 aa
MEDLKKRKMDEAIINGSAETLTTQDYLRSLLDPLNKPQLVDLLSRLGSQYPSIEEEIKSL
ASADPVHRKLFVRGLAWNTTSETLCAEFRMHGEIEEGSVIYDKATGKSRGYGFITYKHME
SAKSALGAPSKLIDGRMAVCNLACEGLTGATTTPDLTQRKLYIGGLSPEISSEMLLHFFG
RYGEIEEGSVAYNKDTNESRGFGFVTYKTVEAAKKAIDDPHKLLGGRTITVKLADTHKGK
TVQMQSPAPMVPVPVPMAAAGFAQPGKAPVGSGTPVGYPYHQTVASYPASSYPNPPVAPA
PYPTQSQVSYAPVSAKKELLGLSSTPPVGMGGYPYYYPKQ
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggaagacttgaagaagagaaagatggacgaggcaatcatcaatggttctgccgaaaca
ttaaccacacaagattatcttcgctcactgcttgaccctcttaataaaccccagcttgtc
gatctcctttctagactagggtctcaatatccttcaattgaagaagaaattaaaagtctt
gccagtgcggatccagtccatcgaaagctttttgttcgtggcttggcctggaataccact
tcagaaaccttgtgtgctgaatttcgaatgcatggtgagatagaagaagggtcagtgatc
tatgacaaagcgacaggaaagtcacgtggctatggtttcattacgtacaagcatatggaa
tcggcaaaaagtgcactaggtgcacctagcaaattgattgatggccgaatggctgtctgc
aatttagcttgtgagggattaactggtgcaactaccacacctgatctaacccagaggaaa
ctctacattgggggtttgtcgccagagatctcaagtgagatgctgcttcatttttttgga
agatatggtgagattgaagaaggctcagttgcctataacaaagatactaatgaatcacgt
gggtttggttttgttacatacaagacagtggaggctgcaaagaaggccatagatgatcca
cacaagttgcttggggggagaactatcactgtgaagcttgctgatacccacaagggcaaa
acagtacaaatgcagtcaccagcgcccatggttccagtacctgtaccaatggcagcagct
ggttttgcgcagccaggtaaagcaccagttggcagtggtactcctgttggttatccttat
catcaaactgtagcatcatatccagcttcttcctaccctaatcctccagttgcacctgct
ccatatccaacacaatctcaagtttcatatgcaccagtttctgcaaagaaagaactgtta
ggactttcatcaacaccacctgtcggaatgggtggatacccttattactaccctaaacag
taa

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