Populus nigra (Lombardy poplar): 133687860
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Entry
133687860 CDS
T10372
Name
(RefSeq) serine/threonine-protein kinase VPS15 isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133687860
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pnz01001
]
133687860
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133687860
Enzymes [BR:
pnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
133687860
Protein kinases [BR:
pnz01001
]
Serine/threonine kinases: Other
VPS15 family
133687860
Membrane trafficking [BR:
pnz04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
133687860
Autophagy
Autophagosome formation proteins
PI3K complex
133687860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
Pkinase
WD40_Prp19
WD40
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
HEAT
PK_Tyr_Ser-Thr
EIF3I
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR90_beta-prop_4th
HEAT_EZ
HEAT_2
Beta-prop_CAF1B_HIR1
Cohesin_HEAT
APH
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
133687860
NCBI-ProteinID:
XP_061963179
LinkDB
All DBs
Position
3:complement(13454923..13465620)
Genome browser
AA seq
1545 aa
AA seq
DB search
MGNKIARTTQASASEYYLHDLPSSYNLVLKEVLGRGRFFKSILCKHDEGLVLVKVYFKRG
DNIDLTDYHRRLINIKETFRALDHHHVWPFQFFQETDKGAYLLRQYFFNNLHDRLSTRPF
LSLVEKKWLAFQLLLAVKQCHDKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDD
PSDFSFFFDTGGRRLCYLAPERFYEHGGEVQVAQDAPLLPSMDIFAVGCVIAELFLEGQQ
LFELSQLLAYRRGQYDPSQYLEKIPDSGIRKMILHMIQLEPEARLSAESYLQDYAAVVFP
SYFSPFLHNFYCCWNPLHSDMRVAICQSVFHEILKQMMGSRTSEVAGTRRDMFANSLNGK
LSEEMVEKQNLDSTSHWRNRERIENGLTSQQYNLLGDINSLLGDVKQSSGYYSAKLMPES
APGSEFCQDLKQCSTKSPDELLQTISNAFRRNDHPFLKKITMDDLSSLMSEYDSQSDTFG
MPFLPLPEDNMKCEGMVLIASLLCSCIRNVKLPHLRRGAILLLKSCSLYIDDEDRLQRVL
PYVIAMLSDPAAIVRSAALETLCDILPLVRDFPPSDAKIFPEYILPMLSMLPDDPEESVR
ICYASNIAKLALTAYGFLIHSISLSKAGVLDEMSSPQNSMASFIERPGQLQRVNNDAQLS
QLRKSIAEVVQELVMGPKQTPNIRRALLQDIGNLCCFFGHRQSNDFLLPILPAFLNDRDE
QLRALFYSKIVYVCFFVGQRSVEEYLLPYIDQALSDQTEVVIVNALDCLAILCKRGFLRK
RVLLEMIEHAFPLLCYPSQWVRRSAVSFIAASSESLGAVDSYVFLAPVIRPFLCRHPASL
ASEKSLLLCLVPPVSRQVFYHDLENARSSDMLERQRKIWYNSSAQSKQWEPEDLLKGDDK
EPNSMKSWPEKEPSPEDQNHDADRLEQPEDGDAKLIAMGFIANASSKVDIRDALSSEKLQ
FSGCMSPQFSGVNSFLHDKSSEGIPIYSFSMDRRAVKFPPATSDSSLQMNSLAISSSYMP
WVDHGIKSFSLASSVPAPKLVSGSFSITNGSKPFYRVVHEPESRENEQTSFFNGKYQDMG
LYGTSKGSSFTVEDAPPTDLTGLPLFARTASIPDSGWKPRGVLVAHLQEHRSAINDIAVS
SDHSVFVSASDDSTIKVWDSRKLEKDISFRSKLTYHLEGSRALCTVMLHNIAQVVVGACD
GTIHMFSVEHMSRGLGNVVEKYSGIADIKKKDIKEGAILSLLNYTSDNSDSQSVMYSTQN
CGIHLWDIRANSNAWTLKAVPEEGYISSLVTGPCGNWFVSGSSRGVLTLWDLRFLIPVNS
WKYSHVCPVEKMCLFVPPPNVTLTSTARPLIYVAAGSNEVSLWNAETGSCHQVMRVANYD
NEEMSDIPWALARPSSKTNLKLDVRRNVKPKYRVEELNEPPPRFPGIRAMLPLPGGDLLT
GGTDLKIRRWDHFSPDRSYCISGPNLNGAGNDNLYETRSSFGVQIVQETKRRHLTAKLTA
KQVLAAAATDSAGCHRDSILSLASVKLNQRLLISSSRDGAIKVWK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacaaaatcgcgcggacgacgcaggcatcggcatcagagtactacctgcacgac
ttgccgtcatcgtataatttggtactgaaggaggtgctaggccgaggcaggttcttcaag
tctatactgtgcaagcacgatgagggattagttctggtcaaggtttatttcaagcgtggt
gataacattgatctcaccgattaccaccgccgtctcatcaacatcaaggaaaccttccgt
gctcttgaccatcatcacgtctggcccttccagttttttcaagaaacagataagggagcc
tatcttttgaggcagtacttcttcaataatcttcatgatcgattgagtactcgtcctttc
ctcagtctcgttgaaaagaagtggttggcatttcagttgcttcttgcggtgaaacagtgt
catgacaagggcatttgtcatggtgatatcaaatgcgagaatgtgctggttacttcctgg
aattggctttatcttgctgacttcgcctcatttaaaccaacttacatcccttatgatgat
ccttcggatttctctttcttctttgacacgggaggaagaagactctgttatcttgcaccc
gagagattttatgagcatggaggcgaggtgcaagttgctcaagatgcacccctgttgccg
tccatggacatatttgctgtagggtgcgtaattgcggaactttttcttgagggtcagcaa
ctgtttgaactctcccagcttcttgcttatcgtagaggacaatacgatcctagccaatat
cttgaaaagatcccagattctggaatccgcaagatgatacttcatatgatccagttggag
cccgaggcacgtctttctgctgaaagctacctacaagattatgcagctgttgtgtttcca
agctacttctcaccctttctgcataatttttactgctgctggaatccacttcattctgac
atgagggttgcaatatgccagagtgttttccatgagatacttaagcaaatgatgggaagc
aggacaagtgaggtggctggcaccagacgagacatgtttgcaaatagtttgaatggaaaa
ctatcagaagagatggttgaaaaacaaaacttggactcgacaagtcattggagaaacaga
gagagaatagaaaatggtttaacttctcaacagtacaatcttcttggagatatcaatagc
ctgcttggggacgtaaaacaaagcagtgggtattatagtgcgaaattgatgcctgagagt
gcacctggttctgaattttgccaggatctaaagcaatgcagcaccaaatctcctgatgag
cttcttcaaactatctcaaatgcatttaggagaaatgatcatccatttctgaaaaaaatt
acaatggatgatttgagttcattgatgtccgagtatgacagtcaatcagatacctttggt
atgccttttttaccgttgcctgaagataacatgaaatgtgaaggtatggttctgattgcc
tctctgctatgctcttgcatacgtaatgtcaagttgccacatttgaggagaggagctata
cttttattgaagtcttgttcattatatattgatgatgaagatcgcttacagcgtgtgctg
ccatatgttattgcaatgctttcggatccagcagcaatagtgcgttctgctgccttggaa
accttgtgtgacattctgcctttagttcgtgattttccacctagcgatgcaaagattttc
cctgagtatattcttccaatgctttccatgcttcctgatgatccagaggaaagtgtgaga
atatgttacgccagcaatatagcgaagctggctttaactgcttatgggttcttgattcat
tcaataagcttgagcaaggcaggtgttcttgatgaaatgagttccccacagaattcgatg
gcatcatttattgaaagacctgggcagctgcagagagtaaataatgatgcgcagttgtca
cagctgaggaaatcaattgctgaggttgttcaggaacttgtcatgggtccaaaacaaact
ccaaatatcaggagagcactccttcaggacattggcaatctgtgctgcttctttggccac
agacaaagcaatgactttctgttaccaatccttcctgcatttctcaatgatcgagatgag
caactaagggcattattctatagcaagattgtatatgtctgcttctttgtgggccaaaga
agtgtggaagaatatcttttaccttacattgatcaggctttaagtgatcaaactgaggtt
gtcattgtaaatgcattggactgcttggcaattttgtgtaaacgcggcttcctacggaag
cgggtactgcttgaaatgatagagcatgcctttccattgttatgctatcctagtcaatgg
gttagaaggtcagctgtctctttcattgctgccagcagtgagagtttaggagcagtagat
tcatatgttttcctagcaccagttatacgcccgttcctttgcagacatccagcttctcta
gcttcagagaagtctctacttttatgtttggttcctccggtttcaagacaggtgttttac
cacgacttagaaaatgcccggagttcagacatgttagagagacagagaaaaatatggtac
aattcatcagcccagtcaaaacaatgggaacctgaggatttgctcaagggagatgataag
gaaccgaattcaatgaagagttggcctgaaaaggaaccaagtcccgaggatcaaaatcat
gatgctgatagattggaacagccagaggatggtgatgcaaagttaatagctatgggcttt
atagccaatgcttctagcaaagttgacattcgtgatgccctgagctcagagaagttgcaa
ttctcaggttgtatgtcccctcagtttagtggtgtgaatagctttttacatgataaatcc
tcagaaggcataccgatatactcctttagcatggacaggcgggcagtaaaatttcctcca
gcaacgtctgattcttcgttgcaaatgaattcccttgcaatcagttcatcatacatgccc
tgggtggatcatggaattaaatcatttagcctggctagttctgttcctgcacctaagctg
gtttcaggttcatttagcattactaatggttctaaaccattttatagagtggtacatgaa
ccagaaagcagagaaaatgagcaaacatcattctttaatggtaaatatcaagatatggga
ttatatggaacttcaaaaggaagttcttttacggtggaagatgcccctccaacagatcta
actggattgccgttatttgcacggactgcttcaattcctgattcaggttggaaacctcgt
ggggtgttggttgcgcacttgcaggagcaccggtctgccatcaatgacattgcagtttca
agtgatcatagcgtttttgtgagtgcatctgatgattcaactatcaaggtgtgggattca
agaaaattggagaaggacatctcatttagatcaaagttaacttatcacctggaggggagt
cgagcgctatgcactgttatgcttcacaacatagctcaagttgttgttggagcatgtgat
ggcacaattcatatgttttctgttgaacacatgtccagaggccttggtaatgttgttgag
aagtattcagggattgctgatataaaaaagaaggatatcaaggaaggtgccattcttagt
cttttgaactacaccagtgataacagtgatagccagagtgttatgtacagcacccaaaat
tgtgggatccatctctgggatatcagggccaattcaaacgcctggacattaaaagcagtt
cctgaggaaggctacatatcatctctggttacaggtccttgtggaaactggttcgtctca
ggctcttccaggggtgtgctaacactttgggatctgaggttccttatccctgtaaactca
tggaagtattctcatgtatgccctgtagagaagatgtgcctctttgttcctcctccaaat
gtcactttaaccagcaccgcaagaccactcatatatgttgctgcagggtctaatgaagtt
tctctttggaatgctgagactgggagctgccaccaggtcatgagggttgcaaattatgac
aatgaagaaatgtctgatataccatgggccttggccaggccatccagtaagacaaatctt
aaactagatgtgaggcggaatgtcaaaccaaagtacagggttgaggagcttaatgaacca
cctcctcgttttcctggtattcgtgcgatgcttcccttaccaggtggtgatttgttgact
gggggaactgatttgaagatacgtagatgggaccatttcagccctgaccgaagctattgt
atttctgggccaaatttgaatggagctgggaatgataatctgtatgaaacaaggtcgagt
tttggagtgcaaattgtacaggagacaaaaagacgacatttaacagccaagttgacagcg
aagcaagttcttgcagctgcagctactgattctgctggttgccaccgagattccatcctc
tcattggcttctgtcaagttgaaccagagacttctgatttcaagtagcagagatggggct
atcaaggtttggaagtaa
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integrated database retrieval system
