KEGG   Populus nigra (Lombardy poplar): 133688047
Entry
133688047         CDS       T10372                                 
Name
(RefSeq) uncharacterized protein LOC133688047
  KO
K12828  splicing factor 3B subunit 1
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133688047
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pnz03041]
    133688047
   03036 Chromosome and associated proteins [BR:pnz03036]
    133688047
Spliceosome [BR:pnz03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    133688047
 Complex B
    133688047
 Complex C
   U2 SnRNP specific factors
    133688047
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    133688047
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N Htt_N-HEAT_1 HEAT_2 Cnd1 HEAT_ECM29 XMAP215_CLASP_TOG Vac14_Fab1_bd UME Adaptin_N
Other DBs
NCBI-GeneID: 133688047
NCBI-ProteinID: XP_061963414
LinkDB
Position
1:18349145..18353300
AA seq 1264 aa
MDPEIAKTQEERKKMEQQLASLTSLTFDRDLYGGVDREAYETSIPATDDEEPDMGLNEVA
QRLASYTAPKSVLKEMPRGGDDSEETDGFRKPSRIIDREDDYRRRRLDRIISPERHDPFA
AGEKTPDPSVRTYSDVMMEESLKKQKEELLRKIANKKKEEEEARAGKEEKVASSVPKRSN
RWDQSKEDDGKVVKKAKTGSDWDLPDATPGIGRWDATPTPGRIGDATPGAGRRNRWDETP
TPGRVVDSDATPAGGVTPGATPAGVAWDATPKGMVTPTPKRQKSRWDETPASMDSATPAL
GAVTPSLGGVTPGPTPLGAIDMATPTPNALAMRGAITPEQYNLLRWEKDIEERNRPLTDE
ELDAMFPQEGYKILEPPASYVPIRTPARKLLATPTPMGTPLYSIPDENRGQQFDLGQEPP
AGLPFMKPEDYQYFGALLNEEDEEELSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTD
KAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPL
LIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGI
PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKV
RTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAMY
ANYYTKEVMFILIREFQSPDEEMKKIVLKVVKQCVSTEGVEAEYIRSDILPEFFRNFWVR
RMALDRRNYRQLVETTVEIADKVGVKDIAGRIVEDLKDESEPYRRMVMETIEKVVANMGA
SDIDSRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRL
NNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAI
VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICF
ELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA
ETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDR
DLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVTEAIEGMRVA
LGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPILEDEQDNVYSRPEL
MMFV
NT seq 3795 nt   +upstreamnt  +downstreamnt
atggatcctgaaatcgccaaaacccaagaagaacgcaaaaaaatggaacaacaacttgcc
tctttaacctctttaaccttcgatcgtgacttgtatggtggagtcgaccgtgaggcttat
gaaacatcgattccagctaccgatgatgaagaacccgacatgggtcttaacgaagttgct
cagagactcgcttcgtatactgcaccgaaatcagttcttaaagaaatgcctcgtggcggt
gatgatagcgaagaaactgatgggtttaggaagccatcgagaattattgatcgcgaggat
gattataggaggaggagattggatagaattatttcgccggagaggcatgatccttttgct
gccggtgagaagacgccggatcccagtgtgaggacttattcggatgttatgatggaagag
tctttgaaaaagcaaaaggaggagttgttgaggaagattgccaacaaaaagaaggaagaa
gaggaggcgagggctggaaaggaggaaaaggtggcgagttcagtgcctaaaaggagcaat
aggtgggatcaatcgaaggaggatgatgggaaagtggttaagaaggcgaagacaggttcg
gattgggatttacctgatgctacaccgggaattgggagatgggatgcgacacctactccg
gggaggattggagatgctacacctggtgctgggaggaggaataggtgggatgagactcct
acaccggggagagtggttgattcagatgctactcctgcaggtggggttacgccaggggct
actcctgctggtgttgcttgggacgctactcctaaaggaatggttacccctaccccgaaa
aggcaaaagtctcgttgggatgagactcctgctagtatggatagtgcgactcctgctctt
ggggcggttactcctagtcttggtggtgtgactcctggacctactcctcttggtgcaatt
gatatggctactccaactccgaatgcacttgccatgcgcggggcaataacgcctgagcag
tataatctgctgaggtgggagaaggatattgaggagaggaataggccattgactgatgag
gagttggatgctatgtttcctcaagaagggtacaagattttggagccaccggcttcttat
gtgcctattaggacaccagcaaggaagttgttggctaccccaacaccaatgggcactcct
ctttattctattcctgatgagaacagagggcaacagtttgatctagggcaggagcctcct
gctgggttgccatttatgaaacctgaggattatcagtattttggtgctttgttgaatgag
gaagatgaggaggagttgtccccagaggagcagaaagagaggaagattatgaaactttta
ctgaaagtgaagaacgggacacctccacagaggaagactgctttgaggcagttgacggat
aaggctagagagtttggtgctgggccgttgttcaacagaattttgccactgcttatgcag
cctaccttggaggatcaggagaggcatcttctggttaaggtaattgatagggttttgtat
aaattggatgagttagttaggccttatgttcataagattcttgttgttattgaaccactc
ttgattgatgaggattattatgcccgtgtggaagggagagaaattatttctaatttgagt
aaagcagctggtttggccactatgattgctgctatgcgtcctgatattgataatattgat
gagtatgttaggaacacaactgcaagagctttcagcgttgtcgcttcagctctcgggatt
cctgcattgttgcccttcttgaaagctgtgtgtcagagtaagaaatcctggcaagctcgt
catactggaatcaaaattgttcaacagattgctattttgattggctgtgctgttcttccc
catttgaggtctcttgtggaaatcatagaacatggtctgaatgatgagaatcagaaggtg
aggacaatcactgccttgtccttggctgctcttgctgaggctgctgccccatatggcatt
gaaagctttgattctgttctgaagccattgtggaagggcattaggtcacaccgtggcaag
gtcttggctgcattcttgaaagcaattggttttattattcctcttatggatgctatgtat
gccaactactacaccaaggaagtcatgtttattctgatacgtgagtttcagtcacctgat
gaagaaatgaagaagattgtgttgaaagtggttaagcaatgtgtgagtacagagggcgtg
gaggctgaatatatacgttctgatattcttcctgagttctttaggaacttctgggttaga
aggatggccttggataggagaaattataggcaactcgtggaaacaactgttgagattgct
gacaaggttggtgttaaagatattgctggcagaattgttgaggatctgaaagatgagagt
gaaccatataggcgtatggttatggaaacaattgagaaggttgttgcgaacatgggtgca
tctgatattgattctaggttggaagagcttttgattgatggtattctctatgctttccaa
gagcagaccagtgatgatgctaatgtgatgcttaatgggtttggtgcagttgtcaattct
cttggacagagggtgaaaccttaccttccccagatttgtggtaccattaagtggcgcttg
aacaacaagagtgctaaagtgagacagcaagctgctgatcttatttctaggattgctgtt
gtcatgaagcaatgtcaggaggaacaactgatgggtcatcttggtgttgtgttgtatgag
tatttgggagaagaataccctgaagttcttggttcaattctaggagctctcaaagcaatt
gtcaatgtcattggtatgaccaaaatgactcctcctattaaggacttgcttccaagactg
acaccaattctgaagaataggcatgagaaagtccaggagaactgtattgaccttgttggt
cgaattgctgatcgtggagctgagtttgttcctgccagggagtggatgaggatttgtttt
gagcttcttgagatgcttaaggcccacaagaagggcattcggcgtgctactgtgaatact
tttggttacattgctaaggccattggaccgcaggatgtcttggcgacactgttaaataat
ctcaaggtccaggagcgccaaaaccgtgtttgcacaactgttgcaattgctatagttgca
gaaacctgttcaccttttacggtcttgcctgccttgatgaatgaatatcgtgtcccagag
cttaatgtgcagaatggtgtcttaaaatccctctctttcctgttcgagtacattggcgaa
atgggtaaagactatatctatgcagtgactccattacttgaggatgcactcatggaccga
gatttagttcacaggcagactgcagcttccgctgttaagcatatggctttgggtgtggct
ggtttgggttgtgaagatgcattggtccacttgcttaactatgtgtggcccaacatattt
gagacttcccctcatgtgataaatgctgtcactgaagccattgaaggaatgagggtggcc
ttaggtgctgctgttgtgttgaactactgtcttcaggggctgttccatcctgcccggaag
gtcagggaagtatactggaagatatacaattcactgtatattggagctcaggatgctctt
gtggcagcttatcctatactggaggatgagcaggataacgtctatagtaggcccgagttg
atgatgtttgtataa

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