Populus nigra (Lombardy poplar): 133688652
Help
Entry
133688652 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pnz01009
]
133688652
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133688652
Protein phosphatases and associated proteins [BR:
pnz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133688652
Membrane trafficking [BR:
pnz04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
133688652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Tom37
Motif
Other DBs
NCBI-GeneID:
133688652
NCBI-ProteinID:
XP_061964206
LinkDB
All DBs
Position
1:3543323..3552994
Genome browser
AA seq
1012 aa
AA seq
DB search
MYSLPSSLSGRQPNNSNTIQNLSSVLNNPHSFKSSSDPSAWIGWWSVAPPDFTPVITKHP
QPDISRSDFLPYLSSISDTHSRFEDIKNHTKNNEQESNLDLDLDSVGQGEALVACLREVP
SLYFKEDFALEDGPTFHAACPFTNGVANLSLQEKLTQYLDVVEVHLVKEISLRSNSFFEA
QGQLEDLNGKIVEGCERIRELKETIRVLDKNLVESAMEIHELNVSRGNLVALQNKLSLIL
YVNQALSTLKLLVASADCAGALDVTDDLQQLLNGDELTGLHCFRHLRDNVAAAIDSINSI
LSAEFMQASIHVARDKDLLLLSKAKTRDSMYMNGKDEEQVKLDDEETSNFRDRLLPLIVG
LLRTAKLPSVLRIYRDTLTASMKTTIKNAVAELLPAFSAQSLESERTSAERTSDTDGGGL
SLASKLRSLSSENFVLLLSAIFNIVQAHLVQAAEVKKAIEWIMCSVDGHYATESVAAAIA
VGAATAETTYESGSQGSSLLPFSQQRSTSKLTSSQLKSNDAASPSNISRNFRADVLRENT
EAVFAACDAAHGRWAKLLGVRAVLHPKLRLVEFLSIYNITQEFITATEKIGGRLGYSIRG
TMQSQAKGFVDFQHEMRMTKIKAVLDQETWVEVDVPDEFQAIVASLFYSEPLISEALNET
QVEMTRSYGEVGTSNDGSLVIDNEAQNAAQKLVRMNSTEVSLQNSVQKKSTPSTEPAESN
KVMTATSSAQRNNHKVKERGKSTSQTLSCGGVGYHMVNCGLILLKMLSEYMDMNNYLPTL
SSEVIHRVVEILKFFNTRTCQLILGAGAMQVSGLKSITSKHLALASQVISFVYAIIPEIR
RVLFLKVPEARKALLLSEIDRIAQDYKVHQEEILTKLVQIMRERVLYHLRKLPPVVESWN
RPVDTDSQPSLIAKEIVKEVNYLQRILSRTLHEADIQAIFRQVVIDLHKETSEAFSRFEI
SSPQAKGRLHRDITLILGCIRSLPSGSSSESGTLNWGQLDEFFVQRFGSEAD
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtattctcttccttcttccctgtcaggaaggcaacccaacaattccaataccatccaa
aacctctcttccgtcctcaacaaccctcactccttcaaatcctcctccgatccctccgcc
tggatcggctggtggtccgttgctcctccagatttcactcccgtaatcaccaaacaccca
caacccgatatctcccgatccgatttcctcccctacttgtcctccatctccgacacccac
tctcgtttcgaagacatcaaaaaccacaccaaaaacaacgagcaggaatccaatttggac
ttggatttggattctgtagggcaaggcgaggcgcttgttgcgtgtttgagggaagttccg
tcgctgtattttaaagaggattttgcattggaagatgggcccacgtttcatgcggcgtgt
ccgtttacgaatggggtggcgaatttgtcgttgcaggagaagttgactcagtatttggac
gtggtggaggtgcatttggtgaaggagatttcgttgcggtcgaattcgtttttcgaggcg
caagggcagttggaggatttgaatgggaagattgtggaggggtgtgagaggattagggag
ttgaaggagactattagggttttggataagaatttggttgagtcagcgatggagattcat
gagttgaatgttagtagagggaatttggttgctttgcaaaataagttgagccttattttg
tacgttaatcaggctctttccactcttaaattgcttgttgcatctgcagattgtgccgga
gcattggatgttactgatgatttgcagcagttgctgaatggagatgagctgactggtcta
cattgttttcgtcacctacgggataatgtagctgctgcaatagattccataaacagcatt
ctttcagcagaatttatgcaagcttcaatacatgttgctagggataaagatttgcttctt
ttatccaaagcaaaaaccagggattccatgtatatgaatggaaaagatgaagaacaggtt
aagttggatgatgaagagacctccaattttcgagatcgtcttctccctctcattgttggg
ttgcttagaactgccaagctcccctctgtgttgagaatataccgagatactcttacggcc
agtatgaaaacaactattaagaatgcagttgccgagctgcttccggccttttcagcccaa
tctctggagtcagagcgaacatctgcagagcgaacatccgatacagatggtggaggttta
tcactagcgagcaagttaaggagcttgtcatctgaaaactttgtgctgcttttaagtgct
attttcaacatcgtacaggcacacttagtgcaggctgctgaagtgaaaaaagcaattgag
tggattatgtgcagtgttgatggacattatgccactgagtcagttgctgctgcaattgca
gttggtgcagctactgctgaaacaacttatgagagtggtagccaaggcagttcacttctc
cccttttctcaacagagaagtacttccaagcttacatcatctcagctgaaatcaaatgat
gcagcaagcccctcaaatatttcgagaaattttagggctgatgtattgagagagaacaca
gaagctgtctttgctgcttgtgatgctgctcatggaagatgggcgaagctcctcggggtc
cgtgctgttcttcatcctaagctgagattggtggaatttttaagcatatacaacatcacc
caagagtttataactgccactgaaaagattggtggaagattggggtatagtattcgtgga
acaatgcaatcacaggccaagggttttgttgatttccaacatgaaatgcgaatgacaaaa
attaaggcagtgcttgatcaggagacatgggtggaagtagatgtccctgatgaatttcag
gctattgtagcttcattgttttattctgaaccattgatctctgaggctctaaatgaaact
caagttgagatgacaagaagctatggagaagtgggcacaagcaatgatggttcacttgtg
attgacaatgaagcacaaaatgctgcacaaaaactagtgagaatgaactctacagaggtg
tctttgcaaaattctgtgcaaaaaaaatcgactccctcaactgagccagctgaaagtaat
aaagtcatgactgcaacatcttcagctcagcgtaacaaccataaggtaaaggagcgcggg
aaatccacttctcaaacactttcttgtggaggtgttggttatcacatggtaaactgtggc
ttaatattgctgaagatgttgtcagaatacatggatatgaataattatttgccaacgcta
tcttcagaagttattcatcgtgttgtggagatcttaaaattcttcaatacaaggacttgt
caacttattctcggagctggtgccatgcaggtgtcaggtttgaaatctattacatcgaag
cacttggcccttgctagtcaagtcatcagttttgtatatgctattattcctgaaatcagg
cgagttcttttccttaaagtacctgaagcacggaaagcattactattgtcagagattgat
cgaatagcacaggattataaggttcatcaagaggagatacttacaaagctggttcagata
atgagggaaagggtgttgtatcatctacgtaaattgcctccagttgtcgagagctggaat
agacccgtagatactgattcacagcctagtttgattgctaaagaaattgtaaaggaggtt
aactacctacaacgtatcttgtctagaactttacatgaggcggatattcaagcgattttc
aggcaagtggttatagacttgcataaagaaacttcagaagcattttcacggtttgagatc
agcagtccacaagcaaagggcaggcttcaccgggatattacacttatccttggatgcatt
agatcattaccttctggtagctcgagcgaatctggtacccttaactggggacaacttgat
gagttcttcgtacaaagatttgggtctgaagctgactga
DBGET
integrated database retrieval system
