KEGG   Populus nigra (Lombardy poplar): 133688727
Entry
133688727         CDS       T10372                                 
Name
(RefSeq) WD repeat-containing protein LWD1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    133688727
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pnz04121]
    133688727
   03036 Chromosome and associated proteins [BR:pnz03036]
    133688727
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133688727
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     133688727
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_WDHD1_1st WD40 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_EML_2 Beta-prop_Aladin WDR55 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR41 Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd MIOS_WD40 EIF3I
Other DBs
NCBI-GeneID: 133688727
NCBI-ProteinID: XP_061964298
LinkDB
Position
3:complement(5641851..5644871)
AA seq 342 aa
MQSSSEKRPGIYTYIAQWPIYSLAWSVRQDKKSRLAIGSFLEDYSNKVEIVQFNRDTSDF
TTNSRLIFDHPYSPTNLMFFPSEDAANPDIIATSGDYLRIWQIHDDRIELKSLLNGNKSS
EFSSAITSFDWADFDVHRVATSSVDTTCVIWDIEKEVIDAQLVAHDKEVFDISWGAFNIF
ASVSGDGSVRVFDLRNKDRSTIIYENTMQDCPLLRLEWNKRDPRFIATVGMDSNKIVILD
IRFPTAPLMELCKHKASVNAISWSPCTGRQICSVGDDSRALLWEVVSKAGVRPEYSGAGA
NSQVEPEMWYGSMAAINNVRWSPVELDWIAIAFFSKLQLLKV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgcaaagctcttcagagaaaagaccaggcatctacacttacatagctcagtggcctata
tattcactagcctggtcggttcgacaggacaaaaaatcacgtcttgccataggaagtttc
cttgaagactatagcaacaaggtggaaattgttcaattcaaccgcgacacttctgatttc
accactaatagccgcctaatcttcgaccacccttattcacctacaaacctcatgttcttc
ccctccgaggatgctgcaaatcccgatatcatcgccacctccggagactacttgcgcata
tggcaaattcatgatgaccgaatcgagttgaagtctctccttaatggcaataagagtagt
gaattcagttctgccataacttcatttgactgggctgatttcgatgttcatcgtgtggcc
acttctagtgtcgataccacttgtgtgatttgggacatagagaaggaagttatagacgct
caattagttgcacatgataaagaagtgtttgatatttcatggggtgcattcaatattttc
gcatcagtgtcgggtgatggctcggttagagttttcgatctaaggaacaaagacagatca
acaataatttatgaaaatacaatgcaagactgtcctttgctaaggctagagtggaacaaa
agagacccgagatttatagccacagttggcatggacagtaataagattgttattctggac
attcgctttcctacagctcctttaatggagctatgtaagcataaggcaagtgtgaatgct
atatcttggtctccatgcaccggaaggcagatatgctcggtaggtgatgattcaagggct
ttgctatgggaagtggttagcaaggctggagtgcgaccagaatacagcggtgctggcgct
aatagccaagtggaacctgaaatgtggtatggatcaatggcggcgatcaataatgtgagg
tggtcacctgtggagttggattggattgctattgctttttttagcaagttacaactcctg
aaggtctaa

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