Populus nigra (Lombardy poplar): 133688760
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Entry
133688760 CDS
T10372
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133688760
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133688760
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
133688760
NCBI-ProteinID:
XP_061964350
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Position
3:complement(4947910..4953209)
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AA seq
678 aa
AA seq
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MITKMKNVRCRGGCHLTSVVWLIIFCFFTAASAKTPVRKIPRTSDSSALGVQLNIKNRQR
VVIDNGLVEVTFSSPDGDVTGIKYKGIDNVLEIGNDEDNRGYWDVVWNKPGDPIIFDKLV
ATDFRVIMEDENQVEVSFTKTWDLSMGNSTVPLNVDKRYIVRRGQSGLYLYTILERLEGW
PDVDMDQIRVVFKLQKDKFHYMALSDSRKRTMPMPEDRVSGQPLAYPEAVLLTKPINPEL
RGEVDDKYQYSCEDKDNKVHGWIAEDPPVGFWMITPSNEFRVGGPNKQDLTSHVGPVVLN
MFTSTHYAGKDLNTEYRNGEPWKKVLGPVLVYLNSISPKEDSSILWEDAKEQMSIEVNRW
PYDFPQSEDFPSSDQRGAVTGQLLVRDRYVNERLLYASSAYVGLAAPGDVGSWQTESKGY
QFWIRADRRGHFLIKNVRAGNYSLYAWVPGVIGDYKYDANITINPGSRIRFGHLIYEPSR
NGPTLWDIGIPDRTAAEFYVPDGYPTLMNKLYTSDPAEKFRQYGLWNRYSDLYPNDDLVY
TIGISNVKDWFFAHVTRDAGNKTYDPTTWQIIFELQNVNRNENYTLRLALASATASEIQV
RFNNPSSDRPLFTTGAVGKDNAIARHGIHGLYWLYGIDVPGSQLVEGKNTIYLTQARSDG
PFHGVMYDYIRLEGPRGT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaaaaatgaagaatgtgcgttgtcgtggcgggtgtcatctgacctcggtcgtc
tggctcatcatcttctgcttcttcacagctgcttccgcgaagaccccagtcagaaaaatt
ccaaggaccagcgacagctcggctcttggggttcagctaaatataaagaatcgtcaacgg
gtggtgattgataatggactcgtcgaagtcacattctccagtccagatggtgatgttacc
ggaatcaaatacaaaggaatcgacaacgtgcttgaaatcggcaacgatgaagataatcga
ggatactgggacgtcgtctggaacaagccaggagatcccatcatcttcgacaagttagta
gcaacagattttagagtgataatggaagatgaaaaccaagtggaggtatccttcaccaaa
acatgggatctttcaatgggaaactccacagttcctttaaatgtagacaaaagatatata
gtaaggcgtggtcagtcggggctctacttgtacaccatattggaacgcttggaaggatgg
cccgatgttgacatggatcaaattagagtcgttttcaagctccaaaaagacaagtttcac
tacatggcattatcggactccaggaaaaggaccatgccaatgcctgaagaccgcgtaagt
ggccagcctctggcttatcccgaagctgttcttctgaccaaaccgataaacccagaactt
agaggagaggtggatgacaagtaccagtactcatgcgaggacaaagataacaaggtgcac
gggtggattgcagaggacccccctgtgggattttggatgatcacacccagtaatgaattc
cgcgttggtggacccaacaagcaggatcttacttcccatgtgggccccgttgttctcaat
atgttcacgagcacacattatgctgggaaggacttgaatacagaatacagaaatggagag
ccatggaaaaaggtccttggcccggtactcgtctatcttaattctatttcaccgaaagaa
gattcctcgatactttgggaggatgctaaggaacagatgtcaatagaagtcaaccggtgg
ccatacgattttcctcaatcagaagatttcccttcttcagatcagcgcggtgctgtcact
ggccaattactagttcgtgaccgatacgtcaatgagaggttactgtatgcctcctctgct
tatgtgggtttggccgcgccaggagatgtgggctcatggcaaacagaatccaagggttat
caattctggattcgagctgacagacgtgggcattttttgattaaaaatgtcagagctggg
aactatagtctgtatgcatgggttcctggtgtcattggggattacaagtatgatgctaat
ataacaattaatccaggatctaggatcagatttggtcaccttatatacgagccttcaaga
aatggtcctactctgtgggatataggcattcctgaccgcacagctgcagagttctacgta
ccagacggatacccaacactgatgaataaattgtacaccagtgatccagcagaaaagttt
aggcaatatggattgtggaaccgatactccgatttatatcccaacgatgatctcgtttat
accattggtattagtaatgttaaagactggttctttgcccatgttaccagagatgcagga
aataagacgtacgatccaacaacatggcagattatctttgaactccaaaacgtaaaccga
aatgaaaactacactctccgattggccttggcttcagctactgcatccgaaatacaggtt
cggttcaacaatccaagtagcgatcggccactattcacaacaggagccgtaggaaaggat
aatgcgattgcaagacatgggattcatgggttgtactggttgtatggcattgatgtccca
ggctctcagcttgtcgagggaaaaaatacaatttacctcactcaggctagaagtgatggc
cccttccatggtgtcatgtatgattacattcgtttagaaggaccaagaggaacttga
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