Populus nigra (Lombardy poplar): 133688970
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Entry
133688970 CDS
T10372
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133688970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133688970
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133688970
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133688970
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133688970
NCBI-ProteinID:
XP_061964630
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Position
3:complement(7970405..7971671)
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AA seq
269 aa
AA seq
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MSVVHNKDLVVIRDVWNYNLEKEFKLILNIVDDFPYIAMDTEFPGIVLRPVGSVKTGSDY
NYQTLKANVDLLKLIQLGLTLSDEKGNLPTCGTDKYCVWQFNFCDFNPNEDVYANDSIEL
LSQSGIDFVKNAEVGADATRFTELLMTSGIVLNDDVHWVTFHSGYDFGYLLKMLTGKKLP
DTQADFFELIKIYFPVLYDIKHLMKFCNGLHGGLNKLAEQLGVERIGISHQAGSDSLLTS
STFMKLKEIFFSGSPERYAGVLYGLGVEN
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgtgcataacaaagatttggttgttatcagggacgtatggaattataatctt
gaaaaagaattcaaattgatcctcaatattgttgatgatttcccatacattgcaatggac
actgagtttcctggcattgttttacgcccggtggggagtgtcaagactggctctgattac
aactatcaaacccttaaggcaaatgttgatcttttgaagttaattcaactgggccttaca
ttatccgatgaaaaagggaacttgccaacctgtggaactgataagtattgtgtttggcaa
ttcaatttttgtgattttaaccccaatgaagatgtctatgctaatgattctatcgagctt
ttatcccaaagtggcattgattttgtgaagaatgcagaagttggtgctgatgctacgagg
tttactgagttgttaatgacgtctgggattgttttgaatgatgatgttcattgggttaca
tttcatagtgggtatgattttgggtacttgcttaagatgcttactggcaagaaactgcct
gatacacaagcagatttttttgagctgatcaagatatatttccctgtgctttatgatatt
aagcatttgatgaagttttgtaatggtcttcacggtgggttgaacaagctggctgagcag
ttgggtgtggagaggattggtatttctcaccaagcaggttctgatagtttgcttaccagt
agcacttttatgaaattgaaggagattttctttagtggctcccctgagagatatgctggt
gttttgtatggtcttggtgttgagaattga
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