Populus nigra (Lombardy poplar): 133689192
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Entry
133689192 CDS
T10372
Name
(RefSeq) chromatin-remodeling ATPase INO80-like isoform X1
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133689192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133689192
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
133689192
INO80 complex (yeast)
133689192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
133689192
NCBI-ProteinID:
XP_061964956
LinkDB
All DBs
Position
3:23828795..23839557
Genome browser
AA seq
1527 aa
AA seq
DB search
MENRRQAKDSLSYSNLFNLESLVNFRVPQPDDEFDYYGSSSQDESRGSQGGAMANRNLSE
RELNSVKRKRRYNNSEGEEEDRHFRARITEDKYRSMLGEHIQKYKRRYKDPLPSPAPPPP
RMGIPIPKSSLGGSKTRKLGSEQRGGLHDMETTSEWANDITPSKRRDYHEPEFTPKIYYE
PPYLDIGDGVTYRIPPSYDKLAASLNLPSFSDMRVEEFYLKGTLDLGSLAAMIANDKRFG
PRSQAGMGEPQSQYESLQARLKALTASSSAEKFSLKISEEALNSTIPEGAAGNIRRSILS
EGGVMQVYYVKVLEKGDTYEIIERGLPKKPKIIKDPSIIEREEMEKIGKVWVNIVRRDIP
KHHRIFTTLHRKQLIDAKRFSENCQREVKMKVSRSLKIMKGAAIRTRKLARDMLLFWKRV
DKEMAEVRKKEEREAAEALKREQELREAKRQQQRLNFLIQQTELYSHFMSNKPSSQPSEA
LPIGDEMTDDQGMDLSTAEAGPDDQEEDPEDAELRKEALKAAQDAVSKQKLLTSAFDIEC
SKLREAADIEGPINDASVAGSSNIDLQTPSTMPVTSTVQAPELFRGSLKEYQLKGLQWLV
NCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRFC
PDLKTLPYWGGLQERMVLRKNINPKRLYRRDAGFHILITSYQLLVSDEKYFRRVKWQYMV
LDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFN
EWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTRKTEVMVHCKLSSR
QQAFYQAIKNKISLAELFDGNRGHFNEKKIMNLMNIVIQLRKVCNHPELFERNEGSTYFY
FGEIPNSFLPPPFGELEDIHYSGGRNPITYKVPKVVHNEIVQSSEVLCSAIGRGVGRESF
QKHFNIFSPENVYRSVYAQDNISDRLLKSGTFGFTHLMDLSPAEVAFLATSSFMERLLFS
IMRQGQQFLDGTIDLLMEDMEDDNGNHLEKCKVQAVTRMLLMPSRSETDILKRKIATGLA
DNPFKALVNSHQDRLLSSIKLLHSTYTSIPRTRAPPIDGQCSDRNFAYQMMEELHQPRVK
RLLIGFARTSEFNGPRKPEGPHPLVQEIESELPVSQPALQLTYKIFGSCPPMQSFDPAKL
LTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDR
RDMVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT
KDVTVYRLICKETVEEKILQRASQKHTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQLEQ
KLREIPLQAKDRQKKKPTKAIRVDAEGDATFEDLTETVTQGTGNEPSEDTEKLKSNNKKR
KAASDKQTTPKPRNSQKNELNSTSMDYELDDPFLNDEPQSQRPKRLKRPKKSVNEKLEPA
FTATLQVDSSQMQYPHANNLPSTYSNP
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaggagacaagccaaggactcgctttcttactccaatttattcaatcttgag
tctttggtgaacttcagagttccacaacctgatgatgaatttgattattatgggagtagt
agtcaggatgagagcagaggtagccaaggtggagcaatggcgaataggaatctatcagag
agggaattgaattcggtgaagagaaagaggcggtataacaacagcgagggagaggaggaa
gatagacatttcagggcacgcattacagaggataagtatcgctcaatgctgggagaacat
attcagaagtacaaaaggaggtataaggatcccttgccaagtcctgctcctcctcctccc
cgtatggggattcccattccaaagagtagtttgggtggttcaaaaactaggaagctcggg
agtgagcagcgaggagggttacatgacatggaaaccacgtctgaatgggccaatgacatt
actccatcaaaacgcagagactaccatgaaccggagtttacacccaaaatatactatgaa
cctccttatttggatattggggatggtgtcacttataggatacccccctcttatgataag
cttgcagcatcattaaacttgccaagcttctcagatatgcgggtggaggaattttacttg
aagggcaccttagatttgggttccttggcagcaatgatagccaatgataaaaggtttggg
cctagaagccaagcagggatgggagagccccaatcacaatacgaatcacttcaggcaaga
ttgaaggcattgacagcttctagctcagctgagaaattcagtctcaagatatctgaagag
gcattgaattccacaatcccagaaggagcagctggaaatataagacgctctattttgtca
gagggtggtgtaatgcaggtttactatgttaaggttttggagaaaggagacacatatgag
atcattgagcggggtctacctaagaagccaaagataattaaagacccttccatcattgag
agggaggaaatggagaagattggcaaggtttgggtaaacattgtcagaagagacatacct
aagcaccataggattttcactacgttgcatcgaaagcaactaattgatgccaagaggttc
tcagaaaattgtcaaagagaggtcaaaatgaaggtcagtagatcactcaaaataatgaag
ggtgctgcgattcgcactaggaagttagctagagatatgctgctgttttggaagcgagtg
gataaggagatggcagaggtgaggaaaaaggaggaaagagaagcagcagaagctttgaag
cgtgaacaagagctccgggaagcaaaaagacagcagcaaaggctcaattttctcatacaa
caaacagaactctacagtcatttcatgtcaaacaaaccaagttcacagccctcagaagct
ttgccaattggagatgaaatgacagatgatcaaggaatggatttgagcactgctgaagca
gggcctgatgatcaggaagaagatcccgaggacgctgaattgagaaaagaggctctcaaa
gctgctcaagatgcagtctcgaagcagaaattgttaacaagtgcttttgatattgagtgt
tcaaagctgcgtgaagctgctgatattgagggacctataaatgatgcctcagttgcagga
tctagcaacattgatttgcagacaccctccaccatgcctgttacatcaacagttcaggca
ccggagttgtttagaggtagcctcaaagaatatcagttgaagggtcttcagtggctggtt
aattgttatgagcagggtttaaatggtatacttgctgatgagatgggccttggaaagact
attcaagccatggcattcttggctcatttagctgaggaaaaaaatatttggggtcctttt
ctgattgttgctccagcttctgtcttgaataactgggctgatgaaatcagtcgcttctgc
cctgacttgaaaacccttccatattggggtgggcttcaagagcggatggtacttaggaaa
aacattaatccaaagcgcctttaccgaagggatgctggttttcacattctcattaccagc
tatcaattgctagtgtctgatgagaagtattttcggcgtgtgaaatggcaatacatggta
ttagatgaagcccaggctattaaaagtgctaacagcataagatggaagacattgctcagt
tttaattgtcgtaatcgcttgctgctgactggtacaccgattcagaataacatggcagaa
ttgtgggcccttctgcatttcatcatgccgacattgtttgacagccatgaacagttcaat
gagtggttttctaaaggaattgagaaccatgcagaacatgggggtacattaaatgaacac
cagctaaacagattgcatgcaattcttaagccttttatgctgcgtcgagtgaagaaagac
gtgatttccgagttaacaaggaaaacagaagttatggtgcactgcaagttgagctctcga
caacaagctttctatcaagctattaagaacaagatatctcttgctgagttgtttgatggc
aaccgtggacatttcaatgagaagaaaattatgaatctaatgaacatagtcattcagctg
agaaaggtttgcaaccatccagaattgtttgaaaggaatgagggaagcacatatttctat
tttggagagattcccaattcttttcttccccctccttttggggagttggaggacatacat
tattcaggaggtcgaaatcctatcacatacaaggtgccaaaagtagtccacaatgagatt
gtccaaagttccgaggttctttgctcagcgattggacgtggtgttggcagagagtcattt
caaaagcactttaacatattctctcctgaaaatgtgtatcggtctgtatatgcacaggac
aatatctcagatagattgcttaagagtgggacatttggttttacccatttgatggatttg
tccccagcagaggttgcatttctggcaactagttcatttatggagaggctgttgttttct
attatgagacagggccaacaatttttggatggaaccatagacttgctcatggaagacatg
gaagatgacaatggcaatcaccttgagaaatgtaaagtacaagctgtcacacgaatgtta
ttgatgccatcaagatctgagacagatatcctaaaaaggaaaattgcaacaggccttgct
gataatccgtttaaggctctagttaactctcatcaggacaggcttctgtccagcattaag
ctccttcactcaacttacacgtccatcccacggactcgagctccaccgattgatggccaa
tgctcagacagaaactttgcctaccaaatgatggaagaattgcaccaacccagggtcaag
aggttgttaattgggtttgcacgcacatctgaatttaatggacccagaaagccagagggt
cctcatcctttagttcaggagattgaatctgaactacctgtttcacaacctgctcttcag
ttgacatacaagattttcggttcttgcccccccatgcaaagctttgaccctgcaaagctt
cttacggattctggaaagcttcaaacacttgatattttactaaaacgattgcgagctgaa
aaccaccgggttctattgtttgcacaaatgacgaaaatgctaaatattcttgaggactac
atgaattataggaaatatagatatcttagacttgatgggtcctccaccatcatggatcgt
cgggatatggtcagagacttccagcttaggaatgatatttttgtattcttgctgagtacc
agagctggtgggcttggtatcaatttgacagctgccgatactgttattttttatgaaagt
gattggaatcctacactagatttacaggcaatggatagagcacatcggctgggccagaca
aaggatgttactgtctaccggctcatttgtaaagagacggttgaggaaaagattttgcaa
agagcaagccagaaacatactgtgcaacagcttgttatgacaggtggtcatgttcaggat
gatctcttggctcctgaggatgtggtgtccttgcttctggatgatgcccagttggagcag
aagttgagagaaataccactgcaggccaaggatagacaaaagaaaaaaccaacaaaggcc
atacgggtagatgcagaaggtgatgcaactttcgaagatttgactgaaactgtcactcag
ggtactggaaatgaaccatctgaggacacagagaaattgaaatccaataacaaaaagagg
aaagctgcttctgacaagcagactacaccaaagcctaggaattcacagaagaatgaactg
aattctacatcaatggactatgaattggacgatccttttctaaatgatgagccacagtca
cagcgacccaagaggttgaagaggccaaagaagagtgtaaatgagaaactcgaaccagca
tttactgccacactccaagttgattcatcgcagatgcaatatccacatgcaaataatctt
ccttctacatactcaaacccatga
DBGET
integrated database retrieval system
