Populus nigra (Lombardy poplar): 133689235
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Entry
133689235 CDS
T10372
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133689235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133689235
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
133689235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
Beta-prop_Aladin
ANAPC4_WD40
NBCH_WD40
Beta-prop_EIPR1
PRP4
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR41
WD_LRWD1
eIF2A
Beta-prop_SCAP
PROPPIN
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
WD40_like
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
133689235
NCBI-ProteinID:
XP_061965009
LinkDB
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Position
3:23938125..23942335
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AA seq
596 aa
AA seq
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MFIGQLFLPPPLLFNAISNKVVMAAEEENPALSNLPEESSAVVPDDELMIDNSSPIQPTP
PIIPPVIPSSIPVLPSIAPIPIVPPRPLAPLPIRPPATRPPGVQNGEMRTSDSDSDQEEL
SPTGTTPGSTGGYEISEASRLVRERQQKAMQEFMMKKRAAALAVPTNDMAVRTRLRRLGE
PITLFGEREMERRDRLRMLMAKLDSEGQLEKLMKVHEEEEAASTAAAEDAEEEFVQYPFY
TEGSKELLDARIDIAKYSISKAALRLQRARRKRDDPDEDEDAEIDWSLNQAESLSLNCSE
LGDDRPLSGCSFSCDGEMLATCSLSGVAKIWSVPQVTKVSNLKGHMERATDVAFSPVHNH
LATASADRTARLWNTDGSLLMKFEGHLDRLARVAFHPSGKYLGTTSFDKTWRLWDIDSGV
ELLLQEGHSRSIYGIAFHHDGSLAASCGLDALARVWDLRTGRSIMALEGHVKPLLGISFS
PNGYHLATGGEDNTCRIWDLRKKKSLYVIPAHSNLVSQVKFEPQEGYYLVTSSYDMTAKV
WSGRDFKHVKTLSAHEAKVTSLDISADGRLIATVSHDRTIKLWSSRSNEKDAMEVE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgtttattggtcagctgtttttaccccccccccttttatttaatgcaatttctaacaag
gttgtcatggcagctgaagaggaaaatcccgctttgtcaaatttaccagaagaatcttct
gctgtagtccctgatgatgaactgatgattgataactctagtcctattcaaccaactcca
ccaattattccgccggtaatcccatcttcaataccagttttgccttctatcgctccaata
cctatagttcctccccgcccattagcaccgctccccatccgaccgcctgcaactaggcca
cctggggtgcaaaatggcgagatgagaactagtgactcagattctgaccaagaggaatta
agtcccactgggactaccccggggtcaactgggggttatgaaatttcagaagccagcaga
ctagtgagagaacggcagcaaaaggcaatgcaggagtttatgatgaagaagcgtgctgct
gctttggcagtgcctactaatgatatggcagttaggactcgtcttcgccggcttggtgag
cctataactcttttcggagaacgagagatggagagacgggacaggttgaggatgcttatg
gctaagttggattctgaaggacaattggagaagttgatgaaagttcatgaggaagaggag
gctgcatctaccgcggcagcagaagatgccgaggaagaatttgttcagtatccattctac
actgaagggtcgaaagagctcttggatgctagaattgatattgctaaatactccatttcg
aaggcagctttgcgtcttcaacgtgcaaggagaaaaagagatgacccagatgaagatgaa
gatgcagagattgattggagtctgaatcaggcagagagtttgagtcttaattgcagcgag
cttggagatgaccggccactctctggctgttccttctcttgtgatggagaaatgctcgct
acctgttccttaagtggagttgctaaaatatggagtgtgcctcaagttacaaaggtttct
aacttaaagggacacatggaacgtgcaactgatgttgccttctctcctgtgcacaatcat
ttggcaactgcctccgctgatcgaactgcaaggttgtggaacactgatggttctctcctg
atgaagtttgaaggtcatctagaccgtcttgctcgcgttgctttccatccatcagggaag
tacttgggcaccacgagctttgataagacatggagactgtgggatatagattctggtgtg
gagctgctccttcaagaaggtcacagtcggagcatttatggaatagctttccatcatgat
ggatcattagcagcatcctgtggattggatgcactagcacgtgtttgggacctacgtact
gggagaagtataatggctttggaaggccatgtcaagccacttcttgggatcagcttttca
cccaatggctatcatttagcgactggcggagaggataatacttgccggatatgggattta
aggaagaaaaaatcattgtatgtcataccagcacactcaaatctcgtatcacaagtaaag
tttgagccccaagaaggatattatctggttacatcatcatatgacatgactgctaaggtt
tggtctggccgagattttaagcatgtcaagacattatcagctcacgaagccaaagttaca
tctctggatattagtgcagatggacgtctaattgcgactgtctcacatgaccgaaccatc
aagctgtggtccagcagaagcaatgaaaaggatgctatggaggttgaatga
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