Populus nigra (Lombardy poplar): 133689330
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Entry
133689330 CDS
T10372
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133689330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133689330
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133689330
mRNA degradation factors
5'-3' decay
Decapping complex
133689330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
133689330
NCBI-ProteinID:
XP_061965134
LinkDB
All DBs
Position
3:27166430..27175978
Genome browser
AA seq
1443 aa
AA seq
DB search
MASPGIPHQQGGGGVIGGGGGFDMNKLLKPSAANPMSIMQPPNQQQQQQQQQQGPSPNSN
TITTENPTTSPSFPLPSSSPPYLTPSSSYPPPTGPYHPFHHPHYLSPYPPPPPFQHLHNQ
FLTNTNIHHQNRPQPISSFAPPPPLSPSNSGGAILMDILSNQNQQQPPPSSNLSGPFPSY
ASSAVSTATSAPPVPSAPPVSLASPTQQCCPPPVRMPSTKLPKGRHLNGNHVVYDIDVRL
QGEVQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGH
NQKVTDMAFFAEDVHLLASACVDGCVFIRKINEGPDEEEKPQIFERILLALHIIADGELV
HPRVCWHPHKQEILVVAIGNLILKIDTNKVGKGAGFSAEQPLACPVDKLIEGVQLVGKHD
GEVIELSMCQWMTTRLASASTDGVVKIWEDCKAVPLAVFRPHDGNPVNSVAFLTAPDHPD
HIVLITGGPLNQELKIWASASEEGWLLPSNAESWQCNQTLTLKSSVESNAEDAFFDQVVA
LPCAGLFLLANAKKNAIYAVHLEYGPYPAATRMDYIAEFTVTMPILSLTGTSDSLPNGEH
IVQVYCVQTQAIQQYALNLSQCLPPPLENMELERTESNVSHAFDASNSDGSTIMESSHGS
KPTNMSAGNIASIPPMTSNSSENAPAANHPESLGSFDVNSSLDIASSGGQTKATALHNNA
DNTNTVPPLLPMSPRLPRKLSGLQSLSNSTDTSLQLSDHAGDQSVPDYLVDRRIETVKEN
ASDTSSGDNLSKGEKNVKQTDIAMVSETPIMFKHPTHLITPSEILSRAVSSENSQTTQGL
NVTEAKIQDVLVNNDIESAEVELKVGGETGTDQNNDFDLPRESHAAVAEKKEKSFYSQAS
DLGIQMTGDCCVEAYSVGLVQQVDEGSITEVLDRPPSDEDEKQDMTKDVPAKRGEPETSV
EVPQSPAPTTKAKKPKGKSSQVSVQSSPSPSPFNSTDSSNEPGCGPCAQSSDAALPQILA
MQDTLDQLMNMQKEMQKQMNTMISVPVSKEGKRLEASLGRSIEKVVRANTDALWVRFQEE
NTKLEKLERDRIQQLANLITNFINKDLPTALEKTLKKEIAAIGPAVARAITPILEKSISS
YIMESFQKGVGEKAVNQLEKTVSSKLEVTVARQIQSQFQTSGKQALQDALRSTLEASIIP
AFEMSCKAMFDQVDATFQKELSKHINDTQQQFNSLHSPLAIALRDAINSASSLTQTLSGE
LADGQRQLLAMAAAGANSEVGNPSAKLGNGPLPGLHEMPEAPLDPTKELSRLIAERKYEE
AFTVALHRNDVTIVSWLCSQVDLQGILSMSPLPPLSQGVLLALLQQLACDISNETSRKLG
WMTDVTAAINPVDPMISVHVRPIFEQVYQIVINQRSLPSTSASEAPGIRLLLVVINSVLR
SCK
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtattccacatcaacaaggaggtgggggggtaataggaggaggagga
ggttttgatatgaataaactgcttaaaccctctgccgcaaatcctatgagtataatgcaa
cccccaaaccaacaacaacaacaacaacaacaacaacagggtccttctcccaatagtaac
actatcaccaccgagaatcccactacctctccttccttccctctcccttcgtcttctcca
ccttatctaactccatcttcttcttatccacctcctactggcccttatcacccttttcac
caccctcactatctctccccttaccctcctcctcctccttttcagcatcttcacaatcag
ttccttactaatactaatatccatcaccaaaatagaccacagcccatctcttcttttgca
cctcctcctcctctctcacctagtaattcaggtggtgctattttgatggacatcttgagc
aatcaaaaccaacagcagccacctccctccagtaatcttagtgggcctttcccttcttat
gcttcctccgctgtatccaccgccaccagtgctcctcctgtcccctctgcccctcctgtt
agtttagcatctccgacgcagcaatgctgccctcctccagtgaggatgcccagcaccaag
ctccctaagggccggcatttgaatggaaaccatgtcgtgtatgatattgatgtgagattg
caaggtgaggtgcagcctcaacttgaagtcactcccatcactaaatatgtctccgatcct
ggccttgttctcggccgtcagattgctgttaataggaattacatttgctatggactcaag
cctggtgctattcgtatcctcaatattaatactgctttgagatcattgcttcgcggtcat
aaccagaaagtaacagacatggctttcttcgccgaggatgttcaccttctggccagtgca
tgtgttgatggatgtgttttcatacggaagatcaatgagggcccagatgaggaagaaaaa
cctcaaatttttgaaaggatacttcttgcccttcacataatagcagatggagaactggtc
cacccacgagtgtgctggcatccacacaaacaagaaattttggttgttgcaattggaaac
ctcatcctgaaaatcgataccaataaagttggaaaaggcgcaggattttcagctgagcaa
cctctcgcttgtcctgttgataagctgattgaaggtgtccagcttgttggtaagcacgat
ggtgaagtcattgagttgtcaatgtgtcaatggatgaccacccgtttagcttcagcttca
acagatggcgtggtcaagatttgggaagactgcaaggcagtaccacttgcagtattcaga
ccacatgatggtaatcctgtaaattctgtggcgttcctgactgcccctgaccaccctgat
cacattgttcttatcactgggggcccgctgaatcaggaactgaagatatgggcctctgca
agtgaggagggctggttgttgcccagtaatgctgaatcatggcagtgcaatcagactttg
accttgaagagttcagttgaatcgaacgctgaggatgcattctttgatcaagtggtagcg
ctgccctgtgcaggcttatttctgctggcaaatgccaagaagaatgccatatatgctgta
cacttggaatatgggccttatcctgctgcaacccgcatggattacatagctgagtttaca
gttacaatgcctattttgagtcttactggaactagtgatagtttaccaaatggagaacat
attgttcaggtttactgtgtgcaaacacaagctattcaacaatatgcgttgaacttgtct
caatgccttccaccacctctggagaacatggagttggagagaacagaatctaatgtttct
catgctttcgatgcttctaattctgatggttccactattatggaatcttctcatggaagt
aaacccactaatatgtctgcaggtaacatcgcttccataccaccaatgacttcaaacagt
tctgaaaatgctcctgcagcaaatcatccagaaagcttaggttcttttgatgttaatagc
tcactagatatagcttcttctggtgggcaaaccaaggctactgcattacataataatgct
gacaataccaacactgtaccaccccttctaccgatgagtccaaggttgcctcgaaagttg
tcaggtctccagagtctgtcaaatagcacagatactagtttgcagctcagtgatcatgct
ggtgaccagtctgttccagattatttggtggaccgcagaattgaaactgtgaaggaaaat
gcaagtgatacatcctctggtgataatttgagtaagggtgagaagaatgtcaaacaaact
gatattgcaatggtttctgaaactccaataatgtttaaacacccaacccatcttataact
ccatcggagatattatccagggccgtttcttctgaaaattcccaaaccactcagggcctg
aatgtcacagaggcaaagattcaggatgtgcttgtgaacaatgatattgaaagtgctgaa
gtggagcttaaagttggtggagagacaggaactgatcaaaataatgactttgacttgccc
agagaatctcacgctgctgttgcagagaagaaagagaaatccttctactctcaggcctca
gatctcggcattcagatgacaggagattgttgtgtggaagcgtatagtgttgggctagtc
caacaagttgatgaaggtagtattactgaggtacttgatagacctcctagtgatgaagat
gagaagcaagatatgactaaagatgtgcctgcaaaacgtggtgaaccagaaacttctgtg
gaagttccacagtccccagcccctacaactaaagcaaaaaaaccaaaagggaaaagttca
caagtatctgttcaatcttccccttccccgagtccattcaactctactgattcatccaac
gaaccaggttgcggtccctgtgcccaatctagtgatgctgctttacctcagatattggcc
atgcaggatacacttgatcagttaatgaacatgcagaaagaaatgcagaagcagatgaat
acaatgatttctgtcccagtttccaaagaaggcaaaagactagaggcatcattgggccgg
agtattgagaaagttgttagggctaacacagatgctctatgggttcgttttcaagaagaa
aacactaagcttgagaaattagaaagggaccgaatacagcagttagcaaatttgattaca
aattttataaacaaggatttgccaacagctttggagaaaactttaaagaaggaaatagct
gcaattggacctgctgttgctcgtgctatcactcccattttggagaaaagcatatcatca
tatattatggagtcattccagaaaggggtgggagagaaggcagtgaatcaactagagaag
acagttagttcaaagcttgaagttacagtggccaggcaaatccaatcacagtttcaaact
tctggcaagcaagctcttcaggatgcattaaggtctactctagaagcctcaattattccc
gcgtttgagatgtcctgcaaagctatgtttgatcaagttgatgccacatttcagaaagag
cttagtaagcatataaatgacactcagcaacagttcaattccttgcattctcctttggcc
atcgctctgagggatgctatcaattcagcatcatcactcactcaaaccttaagtggagag
ctggctgatggccaacggcagctcttagctatggcagctgcaggtgcaaactcagaagta
ggaaatccatcagcaaagttgggcaatggaccattgcctggtttgcatgagatgcccgag
gcacctttggatccaacaaaagaattatcaaggttaatagctgagcggaagtatgaggaa
gcattcactgtagctctgcacagaaatgatgtcacaatagtttcctggttatgttctcag
gttgatctacaagggatattgtccatgtcaccgctaccacctctaagccaaggagttctg
ctggcccttctacagcaattggcatgtgatattagtaacgaaacctctagaaagttggga
tggatgacagatgtgactgctgctataaaccctgtggatccaatgatttcagtgcatgta
agaccaatctttgaacaggtctaccagatagttatcaatcaaaggagtctacctagtaca
tctgcttcagaagccccaggcatacgccttcttctggttgtcataaattctgtgctaagg
agctgtaaatga
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integrated database retrieval system
