Populus nigra (Lombardy poplar): 133689347
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Entry
133689347 CDS
T10372
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pnz03016
]
133689347
Enzymes [BR:
pnz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
133689347
Transfer RNA biogenesis [BR:
pnz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
133689347
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
133689347
NCBI-ProteinID:
XP_061965159
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Position
3:20466553..20472995
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AA seq
797 aa
AA seq
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MISVRAVNSCSIFRSSPPVSSFRCRLNSHLRTTTSSSHHDRYSKSGFGFPMFRFDLPSLC
HGDIRRYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTGGEALDDKLVNQAVEKGLLVE
FKKDSERVLLAVVQRRDGKKNWMVYDQNGVTSSIKPQQITYIVPGVDNFDQTQISSFIQK
AQQNLDSSLLEFAWIELLEKNKSVTPEELAEMIFGSVEPLESYCAHLLLSKDDLYFTVLE
TKGSRSIYGPRPTMQVEELMRRKLAKEAAEKELQEFVQLLKSAKAMPSNAKPPKTSWVVE
EKIRCKIESLEAYAIDACKSNDQKRIAGMILTAMGMGKTASSALNLLIDIGYFPVHVNLD
MLKLNIHTDHPDEIISAAEDLLSEPVDPDKINRKDLTHLKVYAIDVDEADELDDALSATR
LQDGRIKVWIHVADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQG
EVCNAVTVSVILHSDGCIAEYSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSEAA
SLRLQWRCEQGAVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVI
ATYGSCNNIPLPYRGQPQSNIDVSAFAHLPEGPVRSTAIVRIMRGAEIDFRKPVRHGVLG
LPGYVQFTSPIRRYLDLLAHYQVKAVLRGDSPPLSAGQLEGMASLINMQTRVVRRLCSSS
LQYWMIEFLKRQPKEKKYRALILRFIKDRVAALLLVEVGLQATAWVSLGTQIGDEVQVRV
EEAHPRDDIISLKEVVV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgatttcggttcgagccgttaactcttgctctatatttcgctcatcacctcccgtttct
tccttccgctgccgtctcaatagccatttgaggaccaccacctcctcctcgcaccatgac
cgctactccaaatcaggctttggcttccctatgttccggttcgaccttccaagtctttgt
catggcgatatacgaaggtactcccttcaaagtttcgttgatacggtgttggaagagctg
gcttcttatcgcaaacgcaaacgccaaggcatttgctctgctatcaaattaacgacgggt
ggagaggctttagatgataaactggtgaaccaagcggtggagaaaggattattagtggag
ttcaagaaggattcagagagagtattgctggcagtggtgcagagacgtgatggaaagaag
aattggatggtgtacgatcagaatggtgttacttcctcgattaaaccccaacaaattact
tatattgttcccggtgttgataattttgaccaaacccaaatctcaagctttattcagaaa
gctcagcaaaacttggactcctcgttgcttgagtttgcttggattgagcttcttgaaaag
aataagtcagttacaccagaagaattagccgagatgatttttggcagcgtggagcctctt
gaaagttattgtgcccatcttttgctatcaaaggatgatctatatttcactgtgctggag
acaaaaggttctcgctctatttatgggcctcgacctactatgcaggtagaagaacttatg
cgtaggaagcttgcaaaggaagctgctgagaaagaacttcaggagtttgtgcaactacta
aaatctgccaaggcaatgccttcaaatgcaaaacccccgaaaacttcatgggtggttgaa
gagaaaatccgatgcaaaattgagtctcttgaagcatatgcaattgatgcatgcaaaagc
aatgaccaaaagagaattgcagggatgatcctcacagcaatgggaatggggaaaacagca
tcctctgcattaaacctcctcatagatattggatactttcctgtccatgtcaatcttgat
atgttgaagctcaacattcatactgatcatccagatgagatcatatcagctgctgaagat
cttctatcagagccggttgacccagacaagattaacagaaaagatctcactcacttgaaa
gtctatgccattgatgttgacgaggctgatgagcttgatgacgcattgagtgcaacgagg
ttacaggatgggcgaattaaagtttggatacatgttgcagatccagcacggtatgtacag
ccagggagtaaagtagacagagaggcaatgagaagagggacttctgttttcttgcccacc
gctacttatcccatgtttccagagaaacttgcgatggaaggaatgagtttgaaacaggga
gaggtttgcaatgctgttactgtatctgttattctgcattctgatggctgcattgcagaa
tactctgtggataactcaatcattaaaccaacctatatgctgacatacgagagtgcatct
gagctgcttcatatgaacctggatgaggaagctgaattaaaacttctttctgaggctgca
tctcttcggttacagtggcgttgtgaacagggtgcagttgacacagccacattagaaact
cgcatcaaggtccctaatccagaagatccagagccttcaattaacctctatgttgaaaac
caggctgaccctgcaatgcgacttgtctctgagatgatgttactttgtggggaagttata
gccacttatggctcttgcaacaatattcctttaccctatagggggcagccccaatcaaat
attgatgtatctgcattcgcacatcttcctgaaggacctgtcaggagcacagctattgtt
cgaataatgcgcggtgctgaaatcgatttcaggaaacctgtacgccatggagtcttggga
cttcctggttatgttcagtttacttctcccatccgtagatacttggatcttcttgctcat
tatcaggtcaaagcagttcttagaggtgactcccctcctctctctgctggtcagctggag
ggtatggcatcactaattaacatgcaaactagggtagtaaggaggctctgcagcagcagt
cttcaatattggatgatagaattcttgaaaaggcaaccaaaggagaaaaaatatcgtgca
ttgattctcaggttcattaaagatcgggttgcagctctgctactagttgaggtggggctt
caagcaactgcctgggtgtctctgggaacacagataggagatgaagtgcaagttagggta
gaagaagctcatccacgtgatgatattatttcccttaaggaggttgtagtataa
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