Populus nigra (Lombardy poplar): 133689367
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Entry
133689367 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133689367
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133689367
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133689367
Complex C
U4/U6.U5 tri-SnRNP related factors
133689367
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133689367
Transfer RNA biogenesis [BR:
pnz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133689367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133689367
NCBI-ProteinID:
XP_061965185
LinkDB
All DBs
Position
3:complement(21147587..21155827)
Genome browser
AA seq
995 aa
AA seq
DB search
MEDTLTPAKRKELEKEEEEKAEIAGTPQKQDSALKKRILTRTCVHEVAVPHGYESNKDET
FHGTLSNPLYNGEMAKSYAFELDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA
FREKQRVIYTSPLKALSNQKYRELHQEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYR
GSEILKEVAWIIFDEIHYMKDRERGVVWEESIIFMPQVIKMVFLSATMSNATEFAEWICH
LHKQPCHVVYTDFRPTPLQHYVFPVGGAGLYLVVDESEQFREDNFMKLQDTFSKQKAGEG
NKSANAKASGRISKGGNASGGSDIYKIVKMIMERKFQPVIVFSFSRREVEQHAMSMSKLD
FNTQEEKDIVEQVFNNAILCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELL
FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD
ERGICIIMIDERMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRNS
FHQFQYEKALPDIGEKVSKLEEEAAVLDASGEAEVAGYHNLKLEMAQLEKKMMKEITRPE
RILYYLCTGRLIKVREGGTDWGWGVVVNVVKKPTAGLGTLPSKGAGYIVDTLLHCSPGPS
ESGSRPRPCPPRPGEKGEMHVVPVQLPLICALSKVRISIPADLRPLEARQSILLAVQELG
NRFPEGLPKLNPVKDMKIEDPEIVELVNQIEELEQKLHAHPLNKSQDINQMKSFHRKAEV
NHEIQQLKSKMRDSQLQKFREELKNRSRVLKRLGHIDADGVVQVKGRAACLIDTGDELLV
TELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIHLRTELAKPLQQLQESARKIAEIQYE
CKLDINVDEYVESTVRPFLVDVVYCWSKGASFSEVIQMTDIFEGSIIRSARRLDEFLNQL
RAAAQAVGEVSLESKFAAASESLRRGIMFANSLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaggatacactaacacctgctaagagaaaagagcttgagaaggaggaggaagagaaa
gcagagattgctggtacaccacagaagcaagattctgctttgaaaaagaggattttgaca
cggacttgtgttcatgaagttgcagtcccacatgggtatgagtcgaataaagatgaaacc
tttcacgggactttgtcgaatccattgtataatggggagatggcaaaaagttatgcattt
gaactcgacccttttcagaaggtgtctgtagcttgtttggaaaggaatgagagtgtttta
gtctctgctcatacgtctgcagggaaaactgctgttgctgagtatgcgattgcaatggct
ttcagagaaaagcaaagggttatatatacttctccgctgaaagccttgagcaatcagaag
tatagggagttgcatcaggagtttcaagatgttgggttgatgactggagatgttaccctg
tcaccaaatgctagttgtttggttatgactacagagattcttagggggatgctttataga
ggttcagagattttgaaggaagttgcttggattatttttgatgagattcactatatgaag
gatcgtgaaagaggggttgtttgggaagagagtattatttttatgccgcaagtgattaaa
atggtttttctttctgcgactatgtcgaatgccaccgagtttgcggaatggatttgtcat
ttgcataagcagccttgccatgtggtttacacagattttcgaccaactcctttgcagcat
tatgtttttcctgtgggtggtgctgggttgtatcttgtggttgatgagagtgagcagttt
agggaggacaattttatgaagctgcaggatactttctctaagcagaaagctggtgagggg
aacaagagtgcaaatgctaaagctagtggaaggatttcaaagggtgggaatgcttcaggg
ggttctgacatatacaaaattgtcaagatgattatggaacggaagtttcaaccagttata
gtttttagcttcagtaggagagaggttgaacaacatgccatgtctatgtctaagcttgat
tttaatacacaagaggaaaaggatatcgtggagcaggtttttaacaacgcaatactctgc
ttgaatgaggaagacaggaatttgcctgctattgagttaatgttgcctctacttaagcga
ggcattgctgtccatcattccggtcttctccctgtaatcaaggaactagtagagcttctt
ttccaggaaggccttgttaaggctctgtttgccacagagacatttgcgatgggtttaaac
atgcctgcaaagactgttgttttcacagctgttaagaagtgggatggcgatagtcatcga
tacattggatctggtgagtatatccagatgagtggaagggctggacgacgtggtaaagat
gagcggggtatttgtatcataatgattgatgaacggatggagatgaatacactcaaagac
atggttttgggcaaaccggctcctctagttagtactttcagactgagctactattcaata
ttaaatctaatgagccgtgctgaaggccagttcactgctgaacatgtgataagaaattca
tttcatcaattccagtacgaaaaggctttaccagacataggggaaaaggtttcaaaactg
gaagaggaagctgctgttctcgatgcatcaggagaggctgaagttgctgggtatcataat
ctaaaacttgagatggcccagcttgagaagaagatgatgaaggaaataacaaggcctgaa
agaattctttattatctatgcactggtcggctgatcaaggtaagagaaggaggaactgat
tggggttggggagttgtagtgaatgttgttaaaaagcccactgcaggattgggaacattg
ccatcaaaaggtgctggttatatagtagatactttacttcattgctctcctggaccaagt
gagagtggctcccggccaagaccatgtccacctcggcctggagaaaagggtgagatgcat
gtggttcctgttcagttgcccctgatctgtgctctaagcaaagtgaggatatccattcct
gctgaccttcggccattggaagcaaggcaaagtatacttctagcagtgcaggagttaggg
aatcggtttccagaaggccttccaaagcttaaccctgtaaaggacatgaaaattgaggat
cctgaaattgttgagttggttaaccaaattgaggaattggaacagaagttacatgcgcat
ccactgaacaagtctcaagatataaaccagatgaaaagttttcataggaaagctgaggtg
aatcatgaaattcaacaacttaagtcgaaaatgcgtgattcccagcttcaaaaattccgt
gaagaacttaagaaccgttcacgggtcttgaaaaggcttggtcatatagatgctgatggt
gtagtccaggtgaagggcagggcagcctgcttgatagacacaggagatgaactacttgtt
acagaactgatgttcaatggtaccttcaatgatcttgatcatcaccaagttgctgctctt
gcaagttgcttcattcctgtagataagtcaagtgagcaaatacatttgagaactgaactt
gctaaaccattgcaacaactccaagagagcgcaagaaaaatagcagagatacaatatgaa
tgcaaattggacattaatgtcgatgaatatgtggaatcaacagtcagaccgttcttggtg
gatgtggtttactgttggtcaaagggagctagtttttctgaggtcatacaaatgactgat
atctttgagggtagcattatcagaagtgctagaagattagatgagtttctgaatcagttg
cgtgctgctgctcaagctgtgggtgaagtcagtttagaaagcaaatttgcagctgccagc
gaaagccttcggcgaggtatcatgtttgcaaattccctttacctttaa
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