Populus nigra (Lombardy poplar): 133689543
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Entry
133689543 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133689543
09122 Translation
03013 Nucleocytoplasmic transport
133689543
03015 mRNA surveillance pathway
133689543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133689543
03041 Spliceosome [BR:
pnz03041
]
133689543
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133689543
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133689543
Spliceosome [BR:
pnz03041
]
Complex C
Other components
EJC/TREX
133689543
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133689543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
133689543
NCBI-ProteinID:
XP_061965416
LinkDB
All DBs
Position
3:2154872..2160542
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDTYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgacacttacgaggaggagcttctagattatgaagaagaa
gacgagaaagcacctgactccgtcggcgctaaagttaacggcgaagccgttaagaaagga
tatgttgggattcacagttcgggattcagagatttccttttgaagccagagcttcttcgg
tctattgtcgactcgggttttgagcatccttctgaagtgcaacatgaatgtatcccccaa
gccatcttggggatggatgtcatctgccaagctaaatctggaatgggaaagactgctgtt
tttgttctttctactcttcagcaaattgagcctacctctggacaagttattgcccttgtt
ctatgtcacactagagagttggcttaccagatctgccacgagttcgagaggttcagcact
tacttgcctgacaccaaggttgctgttttctatggtggggtcaatatcaaaactcacaag
gatctactgaaaaatgaatgccctcatattgttgttggaacacctggaagaatcctggca
cttgctagagataaggacctttctttgaagaacgtcagacattttatccttgatgaatgt
gacaaaatgcttgaatcactcgacatgaggagagatgttcaggagattttcaagatgact
cctcatgataagcaggttatgatgttttctgcaacgcttagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccaatggaaatttatgtcgatgatgaagccaagttgacc
ctccatggtcttgtgcagcactacatcaaactgactgagctggagaaaaacagaaagtta
aatgatcttcttgatgcactggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagctgagctgaacaagttactcgtggagtgtaatttcccctccatttgcatacat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgacttggttggcaggggtattgatattgaacgtgtcaacatt
gtcattaactatgacatgccagactcagctgacacttacttgcacagggttggcagagct
ggtaggtttggcacaaaaggccttgcaattacctttgtatcatcagcttcggattctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagcttcctgagcaaatt
gatacatctacatatatgccatcttaa
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