Populus nigra (Lombardy poplar): 133689842
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Entry
133689842 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 52 A-like isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133689842
Membrane trafficking [BR:
pnz04131
]
Protein recycling
Others
EARP complex
133689842
Endosome - Golgi transport
Tethering complex
GARP complex
133689842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
Motif
Other DBs
NCBI-GeneID:
133689842
NCBI-ProteinID:
XP_061965892
LinkDB
All DBs
Position
3:complement(25187214..25193861)
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AA seq
733 aa
AA seq
DB search
MATTTEAQSNNEIEKSVFDLGAFVGDLGSIEDDAASDDISLEGLEQELEECRNDDVVTNI
LSKGTKLRDHTKGVENNLRQVELDSIQDYIKESDNLVSLHEQIRDCDIILSQMETLLSGF
QGEIGSISSDIKILQEKSMDMGLKLKNRKAAESKLAKFVEDIIVPPRMVDIIVDGEVNEE
YFRTLEILSKKLKFVEADQLIKGSKALKDVQPELEKLRQKAVTKVFDFIVQKLYALRKPK
TNIQILQQSVLLKNKYVISFLKEHAKEVYIEVRAAYVDTMNKVLSAHFRAYIQALEKLQL
DIATSSDLIGVETTRSTGLFSTARGPLKNKSAVFALGERINILKDMDQPALIPHIAEAGS
QKYPYEVLFRSLHKLLMDTATSEYLFCDDFFGEESIFYEIFAGPFAVVDEHFNSILPNCY
DAIGLMLMIRIIHQHQLIMSRRRIPCLDSYLDKVNIALWPRFKMVFDLHLSSLRNANVKT
LWEDDVHPHYVMRRYAEFTASLIHLNVEYGDGQLELNMERLRMAIDDLLMKLAKTFPKPK
PQIVFLINNYDMTIAVLKEAGSEGGKIQLHFEELLKSNTSMFVEELLLEHFSDLIKFVKS
RACKFIFQHVTCKISAFISLLKEMASLASYLPAEEPGSSTEKPITVAEVETIVKDFASRW
KAAIELMHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDTIKKIVGGSALNKDLVSIS
SIMYEIRKYSRTF
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacgactgaggcgcaatcaaataatgaaatcgaaaaaagtgtgtttgattta
ggagcttttgttggtgatttaggctccatcgaagatgatgccgctagtgatgatatatca
ttagaaggacttgagcaggaactagaagaatgcagaaatgatgatgtagttactaatata
ttgtcgaaagggacgaaattgagagatcacacgaaaggggttgagaataatttacggcaa
gttgagttggattcgattcaggattatataaaagaaagtgataatttagtgtctcttcat
gagcaaattcgcgattgtgatatcatcttgtcgcagatggaaactctacttagtggtttc
cagggtgagattggttctataagttcggacattaagattctccaggagaagtcgatggat
atgggtctgaagctgaagaatcgcaaggcagctgaatcaaaactggcaaaatttgttgaa
gacattatagtccctcccagaatggtagacataattgttgatggagaggttaacgaggag
tattttagaactctcgaaatacttagtaagaagctgaagtttgttgaagcagatcaattg
attaaaggttctaaagctctaaaagatgttcagcctgagcttgaaaagctcaggcagaaa
gcagttacaaaggtgtttgacttcattgttcagaaactttatgccttgagaaaacccaaa
acaaatattcagatccttcaacagagtgttcttttaaaaaacaagtatgtcatttctttc
ctcaaggaacatgccaaggaggtatatattgaggttcgtgcagcgtacgtcgatacgatg
aacaaggtacttagtgcacatttccgtgcttacattcaagcattggagaaattgcagtta
gatatagcaacatctagtgatttgattggtgttgagaccacaagaagcactggtcttttc
tcaactgcaagaggaccactaaagaataaatcagctgtatttgctctgggggagaggatc
aacattttgaaggacatggatcaaccagcattgattcctcatatagctgaagctggttcc
caaaagtatccttatgaggttcttttcaggagcttgcacaagctgctaatggatactgct
acttccgagtatcttttctgtgatgatttcttcggcgaagaatccattttctatgaaatt
tttgcaggcccatttgctgttgttgatgaacacttcaattcaatactacctaattgctat
gacgccataggcctgatgctaatgattcgcataatacatcagcaccagctcattatgtct
cggcggcggattccatgcctggattcatatttggacaaggtcaacattgctttatggcct
cgttttaagatggtatttgacttgcaccttagcagcctccgtaatgcaaatgtaaagaca
ttgtgggaggatgacgtccatcctcattatgttatgaggcgttatgctgaatttacagct
tctcttattcaccttaatgttgaatatggagatggacagcttgaattgaatatggagagg
ctgagaatggccattgatgacttgctcatgaagcttgctaaaacattcccaaaaccaaaa
ccacaaattgtgttccttataaacaactatgatatgacgattgctgttttgaaggaagct
ggctcagaaggtgggaaaattcaattgcacttcgaggaactgctgaagagcaacacgtcg
atgtttgtggaagagctgctactagagcattttagtgacctgatcaagttcgtgaaatcc
cgagcctgtaagtttatatttcaacatgtcacttgtaagatttctgcattcatttcatta
ttaaaggagatggcctcacttgcaagttatttgccagcggaggaaccgggttctagcacc
gagaagcccataactgttgctgaagttgagacaattgtgaaggattttgcaagcaggtgg
aaagctgctatagagctgatgcacaaagatgttatcacctctttcagcaacttcttatgt
ggcatggagatattgagagctgcattgacacagctcctgctttattatactaggctatca
gatacaataaagaagatcgtcggcgggtctgcgctgaacaaagatcttgtctctatatcg
tcaatcatgtacgaaatcaggaaatattcaaggactttctag
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