Populus nigra (Lombardy poplar): 133689888
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Entry
133689888 CDS
T10372
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133689888
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pnz02000
]
133689888
Transporters [BR:
pnz02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
133689888
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
SMC_N
RsgA_GTPase
AAA_22
AAA_29
HUN
nSTAND3
Motif
Other DBs
NCBI-GeneID:
133689888
NCBI-ProteinID:
XP_061965969
LinkDB
All DBs
Position
3:23576355..23600669
Genome browser
AA seq
1891 aa
AA seq
DB search
MGNSTRQLKAMLRKNWLLKIRHPFITSAEILLPTIVMLLLIAVRTRVDLQIHPAQACIKE
NMLVEVGKGMSPNFQEVLEALLVRGEFLAFAPDTEETRMMINLMSIKFPLLQQVSLIYKD
ELELETYLTSDLYGTCSQVKNCSNPKIKGAVVFHNQGPQLFDYSIRLNHTWAFSGFPDVR
TIMDVNGPYLNDLELGVNIIPTMQYSSSAFFTLQQVVDSFIIFASQRTETESSTEHIELP
SSNSFNKSSSLKLPWTKFSPSKIRIAPFPTREYTDDQFQSIIKSVMGVLYLLGFLYPISG
LISYSVFEKEQKIREGLYMMGLKDGIFHLSWFITYALQFAISSGIITACTLNNLFKYSDK
SVVFVYFFSFGLSAIMLSFLISTFFTRAKTAVAVGTLSFFGAFFPYYTVNDPAVPMILKV
LASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLVCLLMMLFDTLIYCAIGL
YLDKVLPRENGMRYPWNFLFQKCFWRKNNFVKHHGSSLESNFNDELSNERASFLGNNTHE
PAVEAISLDMKQQELDKRCIQIRNLRKVYASKRGNCCAVNSLQLTLYENQILALLGHNGA
GKSTTISMLVGLLPPTSGDALVFGKNITTDMDEIRNGLGVCPQNDILFPELTVREHLEIF
AALKGVKEDILERVVTDMVNEVGLADKVNTAVRALSGGMKRKLSLGIALIGNSKVVILDE
PTSGMDPYSMRLTWQLIKRIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFL
KHQYGVGYTLTLVKSSPTASVASDIVYRHVPSATCVSEVGTEISFKLPLASSVSFESMFR
EIESCMRRSISKSEMSSSEDKSYLGIESYGISVTTLEEVFLRVAGCGYDETDDFVDRNNI
LSSNSTVPAAYDNRPSETIFDAKNLGNYKKIIGFISAMVGRVSGLMAATILSFINFLGMQ
CCSCCIISRSTFWQHTKALFIKRAISARRDRKTIVFQLLIPAIFLLFGLLFLKLKSHPDQ
QSVTLTTSHFNPLLSGGGGGGPIPFDLSLPIAKEVAAYIKGGWIQNFRQSAYRFPDAERE
LADAIKAAGPTLGPVLLSMSEFLMSSFNESYQSRYGAVVMDKQHDDGSLGYTILHNSSCQ
HAAPTYINLMNAAILRLATGDQNMTIQTRNHPLPMTKSQHLQHHDLDAFSAAIIVNIAFS
FIPASFAVAIVKEREVKAKHQQLISGVSVLSYWVSTYIWDFISFLIPSSFALLLFYIFGL
DQFIGKDCFLPTFLMFLEYGLAIASSTYCLTFCFSEHSMAQNVVLLVHFFTGLILMVISF
IMGLIQTTASANNLLKNFFRLSPGFCFADGLASLALLRQGMKDKSSNAVFDWNVTGASLC
YLGFESIGYFLLTLGWELLPFHKLTPVGIKQYWRSIMNLQHDTHDLEPLLKSPSETVDLN
FDEDIDVQTERNRVLAGSIDNAIIYLRNLRKVYPGEKHRTKVAVRSLTFSVQAGECFGFL
GTNGAGKTTTLSMLTGEESPTDGSAFIFGKDMRSNPKAARRHIGYCPQFDALLEFLTVQE
HLELYARIKGVADYRIDDVVMEKLLEFDLLKHANKPSFTLSGGNKRKLSVAIAMIGDPPI
VILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLR
CIGSPQHLKTQFGNHLELEVKPTEVSSVDLENLCQTIQSRLFDIPSHPRSLLDDIEVCIG
RIDSITSENASVMEISLSQEMIILIGRWLGNEERVKTLVSSTPISDGVFGEQLSEQLVRD
GGIPLPIFSEWWLAIEKFSAIDSFILSSFPGAAFQGCNGLSVKYQLPYSKDLSLADVFGH
IEQTRNQLGIAEYSISQSTLETIFNHFAASS
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggggaattcaacgaggcagttgaaggctatgcttcgtaagaattggcttctcaaaatt
cgccatccttttatcacttctgctgagatcttgcttcctacaattgtaatgttactgcta
atagcggtgcggacaagagttgatttgcaaattcaccctgcgcaggcgtgtataaaggaa
aatatgcttgtagaagtaggaaagggtatgtccccgaattttcaagaagttttggaggca
ttgctggtgaggggagagtttttggcttttgcaccggatacagaagaaacaaggatgatg
attaacttaatgtcaatcaagttccctctactgcagcaagtttctctgatctacaaagat
gaactcgagttggaaacatatttaacctctgatctttatggcacctgcagtcaagtcaag
aattgctcaaatccaaaaatcaaaggagcagtagtatttcataatcaaggtcctcagcta
tttgattacagtatacgacttaatcacacatgggctttctctgggtttcctgatgttaga
accataatggatgtgaatggaccttatctcaatgacttggaactgggtgttaatataata
ccgacaatgcaatacagctccagcgcttttttcactcttcagcaggtagtggattcattc
ataatatttgcctctcagcgaactgaaaccgagtcttcaactgaacatatagaacttcca
tcgtccaattcattcaacaaatcttcctcgctcaagttgccatggaccaaatttagccct
tcaaaaattagaatcgctccctttccaacacgtgaatacaccgatgatcaatttcagtca
attatcaagagcgtcatgggagtattgtatcttttgggatttctctacccaatctctggc
cttatcagttattctgtgttcgagaaggaacaaaagataagagaaggtctctacatgatg
ggcttgaaagacgggatattccatctttcttggtttattacatatgctttgcagtttgca
atttcatctgggatcattacagcttgcaccttgaataaccttttcaagtacagcgacaag
tcagtggtgtttgtgtattttttttcatttggactcagtgcaattatgctgtcctttttg
atatctacattcttcacacgagcaaaaacagcagtggcagtgggtaccctttcgtttttt
ggggccttctttccttattacactgtcaatgacccggctgtccctatgatattgaaggtc
ctcgcctctttgctatcacctacagcctttgctctaggatcaattaactttgccgattat
gagcgtgctcatgttggacttcgctggagcaacatatggcgggagtcatctggggtgaat
tttttggtctgtcttctaatgatgttatttgacacattgatatactgtgctattggcctc
taccttgataaggtccttcccagggaaaatgggatgcgttacccgtggaacttcttattc
cagaagtgcttctggaggaagaataattttgtcaaacatcatggttccagtttagaatcc
aactttaacgatgagctttccaatgaaagggcaagctttttaggaaataatacccatgaa
cctgctgttgaagcaataagcttagatatgaagcaacaagaacttgataaaagatgcatc
cagattaggaatttgcgtaaggtgtatgcttctaaaaggggaaactgttgtgctgtcaat
tctttgcagcttaccttatatgaaaatcagattcttgctcttctaggacataatggagct
ggaaaaagcacaacaatttcaatgcttgttggtcttcttcctcctacttctggggatgct
ttagtatttggaaagaatatcacaacagacatggatgagatacggaatggacttggtgtg
tgccctcaaaatgatatcctttttccagaattgactgtgagagaacatttagaaattttt
gctgcattgaagggtgtgaaggaagatattttggagagggtcgtaactgatatggtcaat
gaagtgggtctggctgataaggtcaatactgctgtgagggctctttctggtggcatgaag
aggaaattatctctgggaattgctctgataggaaatagcaaggtcgtaattcttgacgaa
cctacgagtgggatggatccatactcaatgcgcttgacttggcagttaataaaaagaata
aagaagggcaggataatcttacttacaacacactcgatggatgaagctgatgaactagga
gatcggatagctatcatggctaatggatccttgaaatgctgtggaagctccctatttttg
aagcatcagtatggggttggttatacccttacattagtgaagtcgtcacctactgcttct
gtggcttctgatattgtttaccgccatgttccatctgcaacgtgtgtgagcgaggttgga
actgagatttcttttaagctgcctttggcatcatcggtttcttttgaaagcatgtttagg
gaaatcgaaagttgcatgagaagatcaatttctaaatcagaaatgagtagtagtgaggac
aaaagttatcttggcattgaaagttatggtatttcagtcacaactctggaagaggtattc
ctgagagttgcaggatgcgggtacgatgaaactgatgatttcgtggacagaaacaacatt
ctttcatctaactctacagttcctgcagcttatgacaatcgcccttccgaaacaattttt
gatgcaaaaaatttgggaaattataaaaagattattggattcatatctgccatggtgggg
agagtctctggtttaatggccgccacaatcttaagtttcatcaatttcttaggtatgcag
tgctgtagctgctgtatcatttcaagatcaacattttggcagcatactaaggcattattc
ataaagagggctatatctgctcggagagatcggaaaacaattgttttccaactcctaatt
cctgccattttcttgctttttggtcttctttttctcaagcttaagtcacatcctgatcag
cagtctgttactctaacaacttcacattttaatcctctcttaagtggtggtggtggtggt
ggtccaattccttttgatctatccttgcctattgcaaaagaggttgctgcatatattaaa
ggggggtggattcaaaactttagacaaagtgcatacagattccctgatgcagagagggaa
ttggctgatgcaatcaaggcagctggaccaactttgggaccagttttactttctatgagt
gaatttttaatgtctagctttaatgaatcctatcagtcaaggtatggggccgttgtgatg
gataaacaacatgatgatggaagcttgggatataccattctacacaacagttcctgtcag
catgctgctccaacctatatcaatctaatgaatgctgcgattttgaggcttgctactggt
gaccaaaatatgacaattcaaacacgcaaccaccctctgccgatgaccaaaagccagcac
ttacaacatcatgatttggatgccttttctgctgcaattattgtcaatatcgccttctca
ttcattcctgcttcattcgcagttgccattgtgaaggaacgtgaagttaaggcaaagcac
caacaattgattagtggggtttctgtactttcatattgggtttctacatacatctgggac
ttcattagcttcttaattccttcatcttttgctctcttactgttctatatttttggtctg
gatcagtttattggaaaggattgcttcttgccaacgttcctcatgttcttagagtatgga
ctagcaattgcgtcttcaacatattgccttaccttctgcttttctgaacactctatggct
cagaatgtggttctgttggtccactttttcactgggttgattctcatggttatctcattt
atcatgggccttatacaaacaacagcaagtgcaaataatttgcttaagaacttcttcaga
ttatcaccaggattttgctttgctgatggactcgcttcactggctcttctaagacaaggg
atgaaagataaatctagtaatgcagtttttgactggaatgtaactggtgcttccctttgt
tatctcggctttgagagcatcggttactttcttctcacacttgggtgggaactgttgcct
tttcacaaattgactccagtaggaattaagcagtattggaggagcatcatgaatctccag
catgacactcatgatttagaaccacttctaaaatctccatcagaaactgttgatctcaac
tttgatgaagacatagatgtgcaaacagaaagaaatagggtacttgcaggttccattgac
aatgctatcatctacttgcgtaaccttaggaaggtatatcctggagaaaaacatcgtaca
aaagttgctgtgcgttctttgactttctcagttcaagcaggagaatgttttggcttttta
ggaacgaatggagctgggaagacgactacattgtcaatgttaactggagaggaatctcca
actgatggaagtgcttttatttttggtaaagacatgcgttcaaatcccaaggctgcccgt
cggcatattgggtattgtccccaatttgatgctctattggaatttttaactgtccaagag
catctcgagctttatgcaagaataaaaggagttgcagattacagaatagacgatgttgta
atggaaaagttgttggagtttgacttgctgaagcatgccaacaaaccatctttcactctt
agtgggggaaacaaacgcaaattgtctgttgcaattgcaatgattggagatccacctatt
gtaattcttgatgagccatcgacaggcatggatcctattgctaaacgattcatgtgggaa
gtcatatctcgtttgtcaaccagacaagggaagacagcagtaattcttactacccacagc
atgaatgaagctcaagcactgtgcacccgaataggaataatggttggaggccgattaaga
tgcattggaagtcctcagcatttgaaaacacaatttggaaatcaccttgaactagaggtt
aagcctaccgaagtcagctctgtagatttggaaaacctttgccaaaccattcaaagcaga
cttttcgacattccttcacatccaagaagtttactagatgacattgaagtttgcataggg
agaattgactccattacatctgaaaatgcatcagtgatggagatcagcttgtctcaagaa
atgattattttgattggacgctggcttggaaatgaagaaagagtgaagacacttgtatct
tcaacacccatttctgatggggtctttggtgaacagttatcagagcagttggttcgagat
ggcgggatacctttgccaatattttcagagtggtggttagctatagagaagttttctgct
attgattcatttatcctgtcatcctttcctggggcagcatttcaagggtgcaatggtttg
agtgttaaatatcagttgccatatagtaaggacctatcgcttgcggatgtttttggacac
atcgaacaaactagaaatcaactgggcatagcagaatacagtatcagccagtcaacactt
gagaccatttttaatcattttgcagcaagttcttga
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integrated database retrieval system
