Populus nigra (Lombardy poplar): 133689898
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Entry
133689898 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133689898 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133689898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133689898
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133689898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
MMR_HSR1
GTP_EFTU_D2
Zn_ribbon_RanBP
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
133689898
NCBI-ProteinID:
XP_061965980
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Position
3:505325..511335
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AA seq
749 aa
AA seq
DB search
MPRKGNYGFDYDDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSAC
DICGVIRSSVPGKLKDDKGTVGIICKDSGVSIMAKSLFASLPHRTPQKAVVGQRRNDDFV
TEEGNNFQKLGNFQGKFDEFHKAFSPHNCSHFDIAPFKFDFPSPDDMVSNGLRSSKIGSK
ANLINSRSQNASAGISETVKSSDKSSASIPKGKQGRPGVDEGNHNKNGVVDTQSSEEISD
STSSLMPKAKDKSVGYSSSSINGGKSLGLTSNLNDMSLSDKSGNSNKASAQRPKSSAQYQ
PDKWMLPDKSENALTQLNLAIVGHVDSGKSTLSGRLLHLSGRITQKEMHKYEKEAKLQGK
GSFAYAWALDESPEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADA
AILVIDASIGGFEAGMDSKGQTKEHARLIRSFGVDQIIVAVNKMDSVEYSKDRFDLIGTQ
LGTFLRSCGFKDSLVSWIPLSAVENQNLVAAPSDVRLSSWYHGSYLLDAIDSLQPLKRDF
SKPLLMPICDVVKSSSQGQVSACGKLEAGALRSGLKVCIKVLVMPSGDVGTVRTLERDSQ
ICAVARAGDNVTVSLQGIDGSNVMAGGVLCHPDFPVAVAKHFELKVLVLDFLTIPIVIGS
QLEFHIHHAKEAARVIKIISVLDPKTGKVSKKAPRCLTSKQSAIIEVALDGPVCAEEFTN
CRALGRAFLRTLGKTIAVGIVTRIIEDQE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagggaattacggatttgattatgatgattacgacgattatgactatgac
tatgatgtagaagatcaagttgaagcacctgagcctaagaaaaaaacgagtagtgataag
gttcgggtatggagttgcccgatttgcacttatgataatgatgagagtatgtctgcatgt
gatatttgcggtgttattcgaagttctgtccctggaaaactcaaggatgacaagggaaca
gttggcattatatgcaaagattctggagtatccattatggccaagtctctttttgcatca
ttgccacatcggacaccacaaaaggctgtagtaggtcagcggcggaatgatgattttgtg
acagaagagggcaataacttccaaaagcttgggaatttccaaggaaaatttgatgaattc
cataaggcttttagtccccataactgctcccattttgatatagctcctttcaagtttgat
ttcccatctccagatgacatggtttctaatgggttacgatcctccaaaattggatctaaa
gccaaccttattaactccagatctcaaaatgcatctgctggcatttctgagactgttaaa
agttcagataaatcatctgcctcaattccaaaaggcaaacaaggcaggcctggtgttgat
gagggcaatcataacaagaatggtgtagttgacactcaatcaagtgaggaaatttcagat
agcacatcttcattgatgccaaaggccaaagataaaagtgttggttatagcagttcttca
ataaatgggggcaagtctcttggtcttacaagtaatttgaatgacatgtctttgtctgat
aaatctggaaactcaaataaggctagtgcccagaggcctaagtcatctgcacaatatcaa
cctgataaatggatgctcccagacaaatcagaaaatgctttgacacaactgaatcttgct
attgttggccatgttgattctggcaaatcaacactctcaggtagactgctacatctttcg
ggacggataacccaaaaagaaatgcacaaatatgaaaaggaggccaagttacagggcaag
gggtcattcgcttatgcttgggcattggatgagagtcctgaagaaagggaaaggggaata
actatgacagtcgctgttgcttattttgattccaaaaaatatcatgttgttgtgcttgat
tccccaggccataaagactttgtcccaaacatgatatctggtgcaacacaagccgatgct
gccatccttgttatagatgcctccattgggggttttgaagctggaatggacagcaaaggg
caaactaaggaacatgcacgtcttattagaagttttggggttgaccaaatcattgtcgca
gttaacaaaatggactcagtagagtactccaaagaccgatttgatttaattggaacacaa
cttggaacatttcttcgttcttgtggattcaaggattccttggtgtcatggattccgttg
agtgcagtggaaaatcaaaatttagttgcagctccttctgatgttcgattatcatcctgg
taccatggatcttatctgttggatgcaattgattctcttcagccactgaagagagatttc
tcaaaacctcttctcatgcccatatgtgatgtagttaaatcgtcttcacaagggcaggtg
tcagcctgcggtaaactagaggctggtgctcttcggagtggattgaaggtatgcattaag
gttttagttatgccatcaggagatgtggggacagtacgcaccctagaacgggactctcag
atttgtgcggtcgcaagagcaggagataatgtgactgtcagtctccaaggcattgatgga
agtaatgtgatggctgggggtgttctatgtcatcctgactttcctgttgcagttgcaaaa
cattttgagctgaaagtgctcgtcttagattttttgacaatcccaattgtcattggctct
caattggaattccacatacaccatgcaaaggaagctgcaagagttattaaaataatatca
gtacttgatccaaagaccggcaaggtgtcaaagaaggcacctcgctgtcttacctcaaag
cagagtgccataatcgaggtggctttggatggaccagtttgtgcggaagagttcacgaat
tgcagggctcttggaagggcctttttgagaacattagggaaaaccattgccgtcggaatt
gtaacaaggataattgaggatcaggaatag
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