Populus nigra (Lombardy poplar): 133689906
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Entry
133689906 CDS
T10372
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133689906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133689906
03036 Chromosome and associated proteins [BR:
pnz03036
]
133689906
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133689906
Coactivators
SAGA/TFTC/STAGA complex
133689906
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133689906
STAGA complex
133689906
TFTC complex
133689906
SAGA complex
133689906
SLIK complex
133689906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
Beta-prop_ACSF4
Beta-prop_DCAF12
PROPPIN
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
133689906
NCBI-ProteinID:
XP_061965994
LinkDB
All DBs
Position
3:1399685..1406495
Genome browser
AA seq
675 aa
AA seq
DB search
MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQQQQQNNSNNAINIHSDPDLSTLLHSLS
QPEDSPARYQEEYSKLRTWAYSSLDLYKHELLRVLYPVFVHCYMDIVAKGHIQDARNFFN
SFREDHEMMHSRDLQKLEGVLSPTHLEEMEFAHTLRQSKVNIKICQYSDELMMQYLRKSK
STIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE
RLEKTGGFLSDSEKTEGETKEGDMDENKKRPMDGGKQGASIKKSKKDKAASATAKAVRLE
ANTVPAAPRVKPELPLPVMPAEVEQSILEDLRNRVQLSSMTLPSVSFYTFINTHNGLNCS
SISHDGSLVAGGFSDSSLKVWDMAKLGQQAGNSILQGETDTAPSEHVLGPNSGKRSYTLF
QGHSGPVHSATFSPLGDFILSSSADTTVRLWSTELNANLVCYKGHNYPVWDVQFSPVGHY
FASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSG
ECVRIFIGHRSMILSLAMSPDGRYIASGDEDGTIMMWDLSSGRCISPMMGHHSCVWSLAF
SCESSLLASGSADCTVKLWDVTTSTKPAKTEENKSGNTHRLRLLKTLPTKSTPVSTLRFS
RRNLLFAAGALSRSQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagctgtggtgaagtttgtggagacgtatttgaagaagaaagggttcaag
caagcagagcttgctttccatgaagaaatccaacaacaacagcaacaacaaaacaacagc
aataatgctatcaatatccactcggatcctgatctctcaaccctacttcactccctctct
caaccagaggatagtccagcacgttaccaagaggagtatagtaaactaagaacttgggct
tatagttcgcttgatttgtacaagcatgagttgcttcgagtgctttatccagtgtttgtc
cattgttatatggatattgttgctaaagggcatatccaagatgcaagaaattttttcaat
agcttccgtgaagatcatgaaatgatgcactcacgagaccttcaaaagttggaaggagtt
ctttctcctactcatctggaggagatggaatttgctcatactcttaggcagagcaaagtc
aacattaagatatgtcagtactccgatgagctcatgatgcagtatctccggaagtcaaaa
tccactataatacttgggattgtcaatgagcatattaacttccaagtttctcctggacag
cccatctcaatttctgatgatcctgatgctgttacattaattggaagcagccaggatgca
gctaatcagataaataaaaaagaaatacattgggggttgcttgaagattctttagaagaa
cgcttggagaagacggggggttttctctcagattctgaaaagacagaaggagaaaccaaa
gagggggacatggatgagaacaagaaaagaccaatggatggtggaaagcaaggtgcttca
ataaaaaagtcaaaaaaggataaggctgctagtgcaacagctaaagctgttcgtcttgaa
gcaaatacagtacctgcagcaccacgagtcaaacccgagcttcctttgccagtaatgcca
gctgaagtggaacagtctattcttgaggacttgagaaaccgtgtacagttgagtagtatg
acactgccatctgttagcttttatacctttatcaacacacataacggtttaaactgttct
tcaatatcccatgatggatccttggttgctggtggattctcagactcctcactgaaggtt
tgggacatggcaaagcttggacagcaagctggcaattctattttgcagggtgaaactgat
actgctccgagtgaacatgtattggggccaaacagtggcaaaagatcttatactttgttt
cagggtcattcgggccccgttcattcagccacttttagcccccttggggattttattttg
tcttcttcagcagatacaacagttcgattatggagcacagaactcaatgcaaatcttgtt
tgctacaaaggccataattaccctgtctgggatgttcagttcagtcccgtgggacattat
tttgccagtgcttcgcatgatcgcacagcaaggatttggtctatggataggatacagcct
ttgaggataatggcaggtcacttgtctgatgttgattgcgtgcaatggcatgccaactgc
aattacattgccactggctccagtgacaaaacagttcgactgtgggatgtacagagcggg
gagtgtgtccgcatttttattggtcataggagcatgattttgtcattggccatgtcacct
gatggtcgatacatagcatctggtgatgaagatggcactatcatgatgtgggacctctca
agtggccgatgcatatcgcctatgatgggacaccattcatgtgtatggtcacttgccttc
agttgtgaaagttcccttcttgcttctggttcggctgattgtactgtaaaattatgggat
gtaactacaagcacaaagcccgcaaagacagaagaaaacaaaagtggaaatacacacaga
ttgagattgttaaaaactttgccaacgaagtccactcctgttagcactttgaggttttcg
cgtaggaatctccttttcgcagctggagccctctctagaagtcagtga
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