Populus nigra (Lombardy poplar): 133690048
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Entry
133690048 CDS
T10372
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133690048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133690048
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133690048
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
133690048
NCBI-ProteinID:
XP_061966178
LinkDB
All DBs
Position
3:26694517..26698429
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AA seq
539 aa
AA seq
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MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKAMAENRGKCFDCGAIVTRLIREYN
VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL
EDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKM
KNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDK
GEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV
AIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESDAED
DDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRKLNA
DDAKTSNGAPVKKVKTENEVKPTVKEESSPATKGTATPKTTPSSSKTGPTSGPTGPVTEE
EIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFVVLRDKR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatcttcagttacagccgtcgtgtagtggctgtggcagcaccacagatttg
tacggaagcaattgcaagcatatgacgttgtgcttgacttgtggcaaagcaatggcggag
aatcgcggcaaatgctttgattgtggcgctatcgttactcgcctgattcgagagtataat
gtgagggcgagtacgagtagcgaaaagaattattttataggaagatttgtgactggattg
ccaggtttttcgaagaaaaaaaatgccgagaataaatggtctttgctgaaagaaggaatt
catggtcgccaaattactgatactttgcgggagaagtttaagaataagccatggcttttg
gaggatgaaactgggcagtttcagtatcagggtcatcttgaagggtcgcaatcggcgact
tattatctgttgatgatgtctgggaaagagtttgttgctatccctgctggttcttggtac
aactttaacaaggttgcgcactataagcaacttaccttggaggaagcggaagagaagatg
aagaataggaggaagactgcagatggatatgaaaggtggatgatgaaagctgcacataat
ggagctgctgcatttggtgaggtggagaagccagatgataaggatggtgtttcagctggt
ggaaggggaggtcggaaaaaagcaaacggtgatgatgatgagggcaatgtgtctgacaag
ggagaggaagacgaggaggaagaggcgggaaggaagagtaggcttggactcaataaaggg
ggtggtgatgatgatgaagaaggtccaagaggaggtgatcttgatatggatgatgatgat
attgagaagggcgatgattgggagcatgaagaaattttcactgatgatgatgaagctgtt
gccattgatcctgaggaacgggaagatttagcccctgaagttcctgctcctcctgaaatc
aagcaggatgaagaggacgaggatgaggagaatgaggagggaggactgagcaaatctggg
aaagagttgaagaagctacttgggaaagcaaatggcctgaacgagtcagatgcagaagat
gatgatgacgatgacgacatggatgatgatatttctcctgtactggctccaaagcagaag
gatgctgtgccaaaggaggaacctgctgacaatagtcctgcaaaaccaacgccacctggt
tctgctaagggaaccccttctacctccaagtcagctaaggggaaaagaaaactgaatgct
gatgatgcaaaaacttctaatggtgcacctgtgaagaaggtgaagacagaaaatgaagta
aaacctaccgtgaaagaagaaagctctcctgctactaaaggtactgcaactcctaaaaca
acgccatcatcgtcaaaaaccgggccaacatcagggccaactggccctgtcaccgaggaa
gagattagggctgttttgttgcaaaatggacccgtaactacacaggatctggtggctagg
tttaaatcacgactaaggactcctgaggacaagaaggcttttgcggatattctaaggaga
atttctaagattcagaagaccagtggatctaacttcgttgtgttgagggacaaacgataa
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