Populus nigra (Lombardy poplar): 133690088
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Entry
133690088 CDS
T10372
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133690088
Transcription machinery [BR:
pnz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
133690088
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
133690088
NCBI-ProteinID:
XP_061966248
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Position
3:complement(3614208..3619645)
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AA seq
559 aa
AA seq
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MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH
SFKSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMTGNDKVSVEEEISTSHTRLRE
RMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLD
LSAVPTENTGESKTDSMSDDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTV
QNNLQKPTFVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQAVSLSCW
AEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQ
GAERFDPSRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSH
GRYPDDWEVAKFTGLSLAKIESAKKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEA
VMRQHMREEIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFHVSKERVRKIEKKI
MMKLRDEGIRRNLSRYMIL
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggttttaggctaactcctaagtggggttctcctatgcagtctcactctgcc
accaattctacgtccatgttctcatccttttctgctagaggcatggaggcttctgtcaac
caggcaaggttgtcttttttgtctgttgtttccgaagagggtgatattctcaacaaacat
tctttcaagtcttttgcttgttcatctgcagcacaaaacgtggaaaatgattgcttgcaa
atggaaagactgaagatgaatgtggacaagacgtctcatgttagcataaataacatgacg
ggtaatgataaagtgtctgttgaagaggaaatttctacctcacatacacgcttgagagag
cgaatgacatcgcgtattagctttttgttggacaatcttgatactttagagaagctggtt
gctgacttggatgcactgaagttggaaagggacattttgctgcaattaggaagacttgga
gctctagaatttttcaatgcctgtctgtcaaggactcttcaaacttccaatgttttggac
ttgtctgctgttcctactgagaatacaggagagagtaaaacagatagcatgtcagatgat
ctcacaggcaaaactgttgttcgcactgggaaaaaggaagaaagaaaatttagaagagaa
agagctgcctcagacaacggaaaaaaaactacttctttgtctctgccttcaaagactgtc
caaaataatcttcaaaagcctacctttgtgaaaagaacatcaagctctagtagtagacga
tccttgatagcaagaaatgaggcaaaaatgacaaggggagtcaaggtggcttcagacttg
gagagaatcagaacaactttagaggaagaaaccggacaagcagtcagtttaagttgctgg
gctgaagcaactggacttgacaaaaaggtgctgcagcagcaattgcaatttggttggtac
tgtcgagatgagctcataaagaacactcactcattagttttatacattgcaagaaactac
aggggaatgggaatagccatggaagatttaattcaggctggaaatttgggtctcttacaa
ggtgcagaaaggtttgatccctcaagggggtacagattctcaacctatgtccagtattgg
ataaggaaatctatgttaaagattgttgagcggcatgctagagggatccaaattccttat
gcattaagccggtcaataaacaagatacaaaaagctcgaaaagccctcagcaacagccat
ggcagatacccagatgactgggaggttgctaaattcacaggtctatctttggctaaaatc
gaatcagctaagaaatgtctcagagtcgtggcttcacttgatcagaaaataggagaaggt
cactatgctaaatattcggaatttatccctgatatgtcaattcagaatcctgaagaggct
gtcatgaggcagcacatgagagaagaaatctatgatctcttgagaggtttggattcaaga
gagaagcaagtgatggttctgagatacgggttcaaggacaatcaacccaaatcacttgca
gagatcgggaggctattccatgtgagcaaagagcgtgtgaggaagattgagaaaaaaatc
atgatgaaactaagggatgaaggaatccgcagaaatctaagtcgttacatgattttgtag
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