Populus nigra (Lombardy poplar): 133690256
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Entry
133690256 CDS
T10372
Name
(RefSeq) preprotein translocase subunit SCY1, chloroplastic-like isoform X1
KO
K10956
protein transport protein SEC61 subunit alpha
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03060
Protein export
pnz04141
Protein processing in endoplasmic reticulum
pnz04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
133690256
04141 Protein processing in endoplasmic reticulum
133690256
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133690256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133690256
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pnz02044
]
133690256
Membrane trafficking [BR:
pnz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
SEC61 complex
133690256
Secretion system [BR:
pnz02044
]
Sec (secretion) system
Eukaryotic Sec-SRP protein
133690256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecY
GPHR_N
SieB
Motif
Other DBs
NCBI-GeneID:
133690256
NCBI-ProteinID:
XP_061966471
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All DBs
Position
3:complement(9341060..9349669)
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AA seq
541 aa
AA seq
DB search
MLLTVREACPCSPISFNLSRLNSTRFSQRLKTSVCRASISVQPKPNAKSWNSTLNSNSCE
SSSFDPLGINLDVPSSLNAAWESLLAFLSPILESASNTKKDKRGVAAAIEDSSIDFGDFF
KGPLPGKFLKLLGFLVVSRLGIYIPLGGVNREAFAGNLDQNSLLSTLDSFSGGGIGRLGI
FSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQV
LYLRPFVDDFSMQWVLTSVTLLTLGSVFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS
FGQTAAQAIQDGNYVGLGTIIFSFFLLVLGIVYVQDKGFQEAERKIPLNYASRYTSSGGG
LQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKKAALTLNPGGSFYLPTNI
LLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSTFLA
ILAAGPSVIEQISHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRY
D
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgttgttaactgtgagagaagcatgtccttgctcgcccattagcttcaacctttcccgt
ctcaattccacaagattctctcaaagactcaaaacctcagtttgcagagccagcatctct
gtccagccaaaacccaatgccaagtcatggaactctacccttaactccaacagctgtgag
agctccagttttgatcccttgggtattaatttagatgtaccatccagtctaaatgctgcg
tgggaaagtcttctagccttcttatcaccaatacttgagagcgcttcaaatacaaaaaaa
gataagcgaggagttgcagctgcaattgaggacagttccattgattttggtgatttcttc
aaaggccccctaccaggaaaatttctcaagcttttggggtttctagttgtatcccgtctt
ggaatatatataccccttggtggggtaaatcgggaggcgtttgctggaaatttagatcag
aatagcttattaagcactttggattcattttccgggggaggcattggtagacttggaata
ttttcacttggaattgttccctttatcaatgcccagattgtgtttcagcttcttgctcaa
atttatcccaagttgcaagatcttcagaaaagagaaggtgaagcaggaagaaagaaaatt
cttcagtatactcgttatgcttcagttgggtttgctatagtacaggcaattggccaggtt
ctttaccttcgtcccttcgttgatgactttagcatgcagtgggttctaacatctgttact
ttattgacacttggctctgtgttcacaacttacatcggagaacggatctctgatctaaaa
cttggaaatggcacatctcttttgatatttacaagtattatttcctacttgccggcatct
tttggtcagactgctgctcaggcaattcaggatggtaattatgttggactcggcaccatt
atcttctcattcttcctattagttctcggcattgtgtatgtccaggacaaaggatttcag
gaggcagagagaaagattccactcaactatgcctcaaggtacaccagcagcggcggcggg
cttcaaaaatctgcttatctaccctttaaggtaaatagttctggggtgatgccaattata
ttttctacatcatcattggctctacctggcaccctagcacggttcactgggatatctgca
ctgaagaaagctgcattgactttgaacccagggggttctttctatctccccaccaatatc
ctattaatagccttcttcaactattactataccttccttcaattagaccctgatgatgtg
agtgaacaactgaagcgccaaggtgcatcaattccactagtacgaccagggaaaagcaca
gctgcatttcttaaaacagttcttagccgcatatctgttctgggttctacctttttggct
atcctggctgctggtccttctgtgatcgaacaaatctcacacttgactgcatttcgagga
tttgcaggcacttccgtcctgattcttgttggttgtgcaacagacactgcaagaaaagtt
caagcagaaataatatcccaaaagtacaagaacatagagttttatgacattgacaggtat
gattaa
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