Populus nigra (Lombardy poplar): 133690663
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Entry
133690663 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133690663 isoform X1
KO
K06100
symplekin
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133690663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133690663
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133690663
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133690663
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133690663
U7-dependent histone pre-mRNA processing factors
133690663
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
MA3
CRM1_C
Motif
Other DBs
NCBI-GeneID:
133690663
NCBI-ProteinID:
XP_061966892
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All DBs
Position
4:complement(7955796..7974941)
Genome browser
AA seq
1329 aa
AA seq
DB search
MASMDEALSLLTAANSHGDLTVKLSSLKQAKDVLLSLEPSLAAELFPSLVELQYSPEGIV
RQKLVEVIEEIGLKAMENCSILIPVLLGLLRDNDSVVARESIVSGTHLYCGVLEEMALQC
HRRGKVERWLEGLWIWMLKFKDAVFAIALEPGPVGIKLLALKFLETYILLFTTETTDSDR
LVAEGSRRLFNISWVAGGHPVLDPVSLMSDANKTLVILLDFLWSPGSLPGALMIAVVNCL
AAVARKRPLHYETILSALLDFDPKVEKGCHAASIQYSLRTAFLGFLRCTYPTILESRDKL
LRALRAMNAGDAAEQAIRQVDKMIKNNERTSREVRFSRDDQPTSQLPVSGDQLRKRSVPM
DNEEQANGHEMAQKRSRYGPNILSTTPIQINESGPDSVFDNGISANVHLSDSDLTPAEQM
IAMIGALLAEGERGAESLELLISNIHPDLLADIVITNMKHLPKSSPPLTRLGSLPVTLQN
CSSSSPAQAVAPSAPVSSAQGPIPVVTAGNLSLSDAPIVNNFPVDSKRDPRRDPRRLDPR
RTATSVGVPSVAIVDDHGGMQPEMDSSVSLSKASPLPVVTSVENPPEPYISNSKIEDKSL
EGLLVSKTDQGSMSEEGICRPEEIVPMSEAKASSDQAFSPPHTSEEGDVVLKLSDFEVAS
GADTLSVMEPEQLSPDVSNISVPEEICQVDLPQLPPYVELTEEQQKTVRQLAVERIIESY
KHLSGTECSQTRMALLARLVAQIDADDDVVVMLQKHVLVDYRQHKGQELVLHFLYHLHSL
TILDSVGSASYAAVLYEKFLLVVARSLLDAFPASDKSFSKLLGEVPFLPESAFKLLDDLC
HCDIFDSHGKEVRDGERVTQGLGAVWGLILGRPNNRQAFLDIALKCAVHLQDDIRSKAIR
LVANKLYQLNYISQNIEQFATNMLLSVVEQHASDIKPSQSVSTDQREGEVVSQEVSVSGS
QVSGTGNCENDSMKGAQPLVQSVSTMSFPEVQRHISLFFALCTKNPGLLQIVFDIYGQAP
KTVKQAVHRHIPVLIRALGSSYSELLRIISDPPEGCENLLMLVLQILTQETTPSANLITT
VKHLYETKLEDATILIPILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPAL
TPAEVLVAIHDINPNKDGLPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLF
MRTVIQAIDAFPSLVDFVMEILSKLVSRQVWKMPKLWVGFLKCVSQTRPHSFQVLLQLPP
PQLESALNKHANLRGPLATYANQPSTKTSLPRSTLAILGLVNERHMQQLPISSLHPSSTS
SSAHGANTA
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatggacgaagcgctctctctcctcaccgcagcgaattctcacggcgatttg
accgttaagctatcttctcttaagcaagccaaagatgttttattgtcactcgagccgtcg
ttggcggctgagctttttccttccttagtcgaactgcagtactcgccggagggaatcgtc
cgacaaaagcttgtggaggtaattgaagaaattggtttgaaagcaatggagaattgctca
atactaatacctgtcttattgggacttttaagagataacgattctgttgttgcaagggag
tctattgttagtggcacacatttatattgtggtgttctagaggaaatggcattgcagtgt
caccggcgtggtaaggttgaacgatggctcgaaggactatggatatggatgcttaagttc
aaggatgctgtctttgcaattgcattggagcctggacctgttgggataaagttgctggcg
ttgaaatttttggaaacatacatcttgctttttactaccgagaccactgattctgataga
cttgttgcagaaggaagcagacggttattcaacatttcatgggtagccggcgggcatcct
gttttggatccagtttctctcatgtcagatgccaataagacacttgtcattcttttggat
tttttatggtcgcctggtagtcttcctggtgcactgatgatcgctgttgtcaattgtctt
gcagctgtagcgcggaagaggccgcttcattatgagactattctatctgccttgcttgat
tttgatccaaaagttgagaagggatgtcatgctgctagtatccagtactctttaagaact
gcttttttgggattcctgcggtgtacttatccaaccatcttggagtcaagggataaattg
ttaagggctttacgtgcaatgaatgctggggatgctgctgagcaagccatccgccaagtt
gataaaatgattaaaaataatgagcgcacttctcgtgaagtcaggtttagcagggatgat
cagccgacaagccaactgcctgtctcaggagatcagctccggaaaagatctgtgcctatg
gataatgaagagcaagctaatggtcatgaaatggctcaaaagcggagtcgatatggtcct
aacattctgtcaactacaccaatccaaatcaatgaatctggaccggattctgtatttgat
aatggcatctccgctaatgttcatctatcagatagtgatttgactcctgcagaacaaatg
attgctatgattggtgcattgcttgctgaaggagagaggggtgctgaatcacttgaactt
cttatttcaaatattcatcctgatctgcttgctgatattgtcattactaatatgaagcat
ttgcctaagtcctcccctcctttaacaaggcttggtagcttgccagtaactctgcaaaat
tgctcttcaagtagtccagcacaggcagtggcaccatcggctccagtttcctctgcacaa
ggacccattccagtggttactgcaggcaatttatcattgtctgatgcacccattgtcaat
aatttccctgtagattcgaaacgtgatccaagaagggatccacgccgcttggatccacgt
cgtactgctacatcagttggagtaccatctgtcgccattgtggatgaccatggtggaatg
caacctgaaatggacagctctgtttctttaagcaaggcttctcctcttcctgtggtgaca
tcagttgagaatcctccggaaccttatatttcaaacagcaaaattgaggacaagagttta
gaaggtctactggtttctaaaactgatcaaggaagcatgagcgaggagggtatctgtaga
cctgaggaaattgtccccatgtcagaggccaaagcttcttcagatcaagcattttctcct
cctcacacttctgaggagggtgatgttgtattgaagttgtcagattttgaagtggcatct
ggtgctgacacgttatctgtgatggaacctgagcagctttccccagatgtctcaaacata
tctgtgcctgaagagatctgtcaagtcgatttacctcagcttcccccatacgttgaactc
actgaagaacagcagaaaactgtgagacagttagcagttgaacggattattgaatcttac
aagcatctctctgggactgaatgcagccagacacgcatggcattactcgcccgattagtt
gctcagattgatgcagatgatgatgttgttgtgatgctgcaaaaacatgttttagtggat
tatcgacaacataaggggcaagaacttgtgttgcattttttgtaccatctacactcgcta
acgattttagattctgttggaagtgcttcatatgctgctgttctatatgagaaattcctt
ttggtagtggccagatctttgttggatgcttttccagcttcagacaagtcttttagtaaa
cttctcggtgaagttcctttcttgcctgagtctgccttcaaattgttagacgatctctgc
cactgtgatatttttgattcacatggaaaagaagttcgtgatggtgagcgagtaactcag
gggctaggtgctgtatggggtttgattttggggcgtccaaacaaccggcaggcattctta
gatatagctttgaagtgtgctgttcatttacaagatgacattcgatcgaaagctatccgg
ctggtggcaaacaaactctatcagctaaactatatatcacaaaatattgagcaatttgca
acaaatatgctgctctctgttgtggaacagcatgcttcagatatcaagccttcacagtca
gtatccactgatcaaagggaaggagaggtggtaagccaggaagtgtctgtaagtggttct
caagtctcagggactggaaattgtgaaaatgactccatgaagggtgcacaaccattagtc
caaagtgtttcgaccatgtcatttcctgaagtgcaaagacatatttctttattttttgct
ttatgtacaaagaaccctggtctccttcaaattgtatttgatatctatggacaagcacca
aaaactgtaaaacaggctgttcatcgccatattcctgttctaataagggccctaggctca
tcttattctgagctgcttcgaataatatctgatccaccagaaggatgtgaaaatcttttg
atgctggtgctgcaaatattgactcaagaaacaacaccttctgctaatctgataaccacg
gtcaaacatttatatgaaactaagttagaggatgccacgattcttattccaattttatct
tcactttcgaagaatgaggttttgcccattttccctcggcttgttggacttcctatagaa
aaattccagatggcacttgctcatattttacagggttcagctcatacaggtccagcttta
acgccagcagaagtgttggttgccatccatgatattaatcctaataaagatgggcttcca
ctcaaaaagataacagatgcctgttcagcttgttttgagcaacggacagttttcacacag
caggtcctggccaaggcacttaatcagatggtcgatcaaactcctcttcctctactcttc
atgagaacagttattcaggcaattgatgcttttccttcattggttgattttgttatggaa
atactctccaaactcgtgagcagacaggtgtggaaaatgccaaagttgtgggttggcttc
ttgaaatgtgtctctcaaacaaggccacattcttttcaggttttgttgcagctacctccc
ccgcagcttgaaagtgctctgaacaagcatgctaacctcagaggccccttggctacttat
gccaaccaaccaagtacaaaaacttctctacctagatcaacgcttgcaattcttggtctt
gtaaatgaacggcacatgcagcagctaccaatttcatctttgcacccttcaagcacaagt
tcttcagctcatggagcaaacaccgcgtga
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