Populus nigra (Lombardy poplar): 133691061
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Entry
133691061 CDS
T10372
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133691061
04121 Ubiquitin system [BR:
pnz04121
]
133691061
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133691061
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133691061
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133691061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-RING_UBOX
zf-C3HC4
zf-rbx1
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
zf-Nse
DUF7560
Motif
Other DBs
NCBI-GeneID:
133691061
NCBI-ProteinID:
XP_061967369
LinkDB
All DBs
Position
4:complement(6117290..6119536)
Genome browser
AA seq
381 aa
AA seq
DB search
MSLSPPRTRTNGTTGNFQPYWCYQCHQMVRIATTDPSEIICPRCSGQFLCEIGINRPILV
VDFTAFDPSPEARLLEALSLMLDPPIRRFNYSLDEPQPQPQPPRRSWFRRRNRPDFFDTE
IRPRRRRNLSLELDGRDNWDSLDPEIRPRRSRDSSLDGRGILEHEPGIQSRPRTWIQYRP
RNPFGEPIEPLLQSENPVPPLVDPRDFFLGSGLNELIEQLTQNDRQGPPPAPEIAIDTIP
TVKIEASHLVNDSHCPVCMEEFKVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRKELP
VNSESSAQDEDECEDGGGRRGRPVNSESSAQDEDECEDGGGRRGRCSRWRRQLSSLWPFR
ARYGRISPHGEVAGTSQGGEN
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgagcccacccagaacaagaaccaatggcaccacaggaaacttccagccttac
tggtgctaccagtgccatcaaatggtcaggattgccaccacggacccatcagaaatcatc
tgccctcgttgttcagggcagttcctttgtgagattggaattaatagaccaatactggtt
gttgatttcactgcttttgatccttcaccagaagctcgcttacttgaagcactatctctc
atgcttgacccaccaatcagaagattcaattatagtctcgatgaacctcaacctcaacct
caacctccccgtcggtcctggtttcgtagacggaatcgacctgacttttttgatactgaa
attcgtcctcgaaggcgtagaaatctgtcgctagagcttgatgggagagataattgggat
tcattggaccctgaaatccgcccacggaggtctcgggattcgagtcttgatgggagaggt
atcttggaacacgaacctgggatccaatccaggccaagaacatggatccaatacaggcca
aggaatccttttggtgaaccaattgaaccccttctgcaatctgaaaacccagttcctccc
ctggttgatcccagggacttttttttggggtcaggcctaaacgagttgattgagcaattg
acacaaaatgaccgccaagggccaccaccagctccagaaatcgccattgataccatacca
actgtaaaaatcgaggcaagtcatttggtgaatgactctcattgtccggtttgcatggaa
gagtttaaagttggaggggaggcaagggagttgccttgtaagcacatataccacagtgaa
tgtatcgtgccatggttaaggttacacaactcctgtccagtttgtcgaaaggagttgccg
gttaatagtgaaagtagtgctcaagatgaagatgagtgtgaggatggagggggtaggagg
ggaaggccggttaatagtgaaagtagtgctcaagatgaagatgagtgtgaggatggaggg
ggtaggaggggaaggtgctcgaggtggaggaggcagttgtcatctttatggccatttcgc
gctaggtatgggaggattagtcctcacggagaggttgccggtacctctcaaggaggtgag
aattga
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