Populus nigra (Lombardy poplar): 133691153
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Entry
133691153 CDS
T10372
Name
(RefSeq) serine/arginine-rich splicing factor RS41-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133691153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133691153
Spliceosome [BR:
pnz03041
]
Common components
Common spliceosomal components
SR proteins
133691153
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RNA_bind
RRM_5
DbpA
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
133691153
NCBI-ProteinID:
XP_061967502
LinkDB
All DBs
Position
4:11573038..11577364
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AA seq
248 aa
AA seq
DB search
MRAIFCGNLDYDARQSDVERLFRRYGRIDRVDMKSGFAFVYMEDERDAEDAIRRLDQTEF
GRKGRRLRVEWTKQERDSKPAGSRRSSANMTPSKTLFVINFDPIHTRTRDLERHFDPYGK
ILSTRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAARDDDERRNGYSPERRG
RDRSPDRNYNRERSPSPYRRDRGSPDYGHGQNTNARPQRGNHTYDKAEGPENERYRSRSP
PSRERSRS
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgagggctatattttgcggcaatcttgattacgacgcgcgccagtctgatgtagagcgt
ctttttagaagatatgggaggattgatagggtggatatgaagtctggatttgcttttgtc
tatatggaggatgaaagagatgctgaggatgccatccgtaggcttgaccaaacagaattt
gggagaaaaggacgtcgtctacgtgttgagtggactaagcaagaacgtgacagtaagcct
gctggttcaagaagatcatcagctaatatgactccatcaaaaactttgtttgtcattaat
tttgatccaattcatacccgaactagggatctggagaggcactttgatccttatggaaaa
atattgagcacaaggattaggaggaattttgcattcgttcagtatgagttacaggaagat
gctactaaggcattggaagcaactaatatgagcaagttgatggaccgggtcatttcagtg
gaatatgctgctcgagatgatgatgaaagaaggaacgggtacagtcctgagagaagaggc
cgtgacagatctcctgacagaaattataatcgcgaacgatccccaagtccatatcgtaga
gataggggtagcccagactacggccatggacagaatacaaatgccagacctcaaagagga
aatcatacttatgataaagctgaaggtcctgaaaatgaaagataccgcagccgttccccg
ccatctcgggaaaggtcacgctcttga
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