Populus nigra (Lombardy poplar): 133691257
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Entry
133691257 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133691257 isoform X1
KO
K24155
rabconnectin-3a
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
133691257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133691257
Membrane trafficking [BR:
pnz04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
133691257
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
133691257
RAVE complex
133691257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
EIF3I
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
133691257
NCBI-ProteinID:
XP_061967669
LinkDB
All DBs
Position
4:complement(13176729..13192626)
Genome browser
AA seq
2546 aa
AA seq
DB search
MPETSTASPTRASINPTDHLPLSLFRSDIIPPAPTRSASTIDWLPDFSGYSWVAYGASSL
LVISHLPSPLSPEEAAIGPILQQVFELSGDDSSPVKSVSWSPVTPSIGELAAASDNCISV
FSHDSASSKGSFCWSQNAMLVQSTKVGAITWTGSGDGIVSGGTDVVLWRRRNMSWERAWK
FKRDQPQNLVSATWSIEGPSATAAYPSKVDVKGSDQTSNCVLVCYGNGTSDYVKTELHHP
QPVSKIQWRPSTGRQAQRDKKHLRRHVLLTCCLDGTLRLWTEVDSGKVRKLGKDNHDHKT
MRKSFCIAAVIEINQVLKGTLGMDVFFSWTSEIGGIYRIGEGISQTFSVEGNGHDRVGRC
EWLIGFGPGRGITFWAIHCLDDISPIRFPRVTLWKTQELEDLEAGHLHGAGFANFNAWLL
LDKVVVLRNCLSGPPNICSLMHLSPCNFLVRSLLYSQIPSDIEDASFNKSKIDKYSSCSS
GGVLNGGHTGKILQVAMHPHIYEVELAVSLDSDGLLLFWIVSTISNCSLGPAKLIPGWKL
SGKLATYDSCSKYTSLRWAPSTLGEDHVLLVGHAGGIDCFIVKISQICKEGIICHYIGTI
PLTGHGPFEDGPTNIFAVPLPSSCNKTFRYNRFLLLAIWLKGFQPISWEVTLHSFDLSGG
CCDCKFDDKNTPVLNFENTFADRRYCVGVDPCSSHLPEPYCDDQITSFSVVCPGDFISMP
ESLGSNKDLCSGVPAYVMATGCSDGSLKLWRSNASKQSTPQILWELVGKFVAHQGPVSAI
CLTACGRKIATISAGSHLDDTSILHVWEAVHVIGAGSFILEDRIAVGRDVISLNWLTLGN
GQLFLGICMHNEMQVYAQKHHGGQTLLSPQSLNVNNWSCIAVSHTFPAIRDFLWGPNATA
IIVHDSYISLLSQWLFLEGDKQWGKYPPNVIREGYKGGKDKEILSCIFTDGEIDLKETLI
EGISGGFKPPIHDKLDAKNDCSSSSLFVAMAQLKHHSNAVRGFWSLVELAEKLTGTLAIY
HPEALIMNIYSGNWKRAYVSVRHLVEYLSSGCAAEKIYNSADHSKIVPQILLSNYFEGFL
LKDSGSTNKGFQWSADARLPTSSSQFFAYNFTSDASNNMFAASSTKSELSAFSETLEKYD
FESLTNLEKSEMLAIIDLVSDVQHPACAYANLDEPGRRFWVSLKFQQLHFFRSFGRSPSV
EELVGDSRLMSWAFHSDCQENLLSSFLPNEPSWKEMQTLGVGFWFTNVAQLRARMEKLAR
SQYLRKKDPKDSALLYIVLNRLPVLSGLFKISKDEKDKPLVAFLSRNFQEEKNKAAALKN
AYVLMGRHQLELAIAFFLLGGDTYSAITICAKNFGDEQLALVICRLIEGRGGPLEHHLIT
KFILPSASERGDFWLASLLEWELGNFSQSFLTMLGLQTSSLTDKSALSSNNAAFMDPHIG
LHCLSLASKNSMRNAVGEQNAAVLRRWATIMAATAFNRCGLPLEALECLQSSLNILGGID
PGSVSDVDQSQILHGILNPFASESCNWLSGDVALCLQSHGKLDLALQYFSKLMSEHPSWL
NTIVGSIQPGTSSKDCEIHQHEKLLEEFREKLYTGLLMFEQKFLVVPSCVIKMILVWSCS
NGLPFIGHDLIVNYASRNHTQDKSDGVESFILYPLLHKPCLKFIEDASLLLSRFITSCSV
TCFQPKPFYIEGTMSVKVKSIWSDVHGFYFQGIMQTLWSLRAAMRIFSSSEDVSRSLVIL
DLFEYYIYFASAWLQRKSKGLLLMVQPLLITLTSGHTPYEVDIGNLKSILHYIAELPFSL
SIDDAGSGHEVVKCSSHEQDGQTMLSFSEDEKWHVVGACLWMHMSRFMKHQLHLLSIKLE
DGCFSGVSHGNVSSLASSLTIFRSDSISRKEEIGFCSLILAKLLRTMLVHVSSYHVKLLG
LFLQQEVENRLQIPTLVWMKESSLSQAKALYQDVSADMMNSKDELSSFDVLWDACADPRM
VSEGFVQEEINLSLFFTHKSYEGWSDEYMSITGELETEDTYEHELKLGNRPSGDEIGSPS
IGLFRNGRAFLSSWQKDAVMTKEVSHFQNAKVVHKRDGELLEALCINSVDERQAALASNR
KGIVFFSWEDGIPFGDQSEYIWSDADWPSNGWAGAESTPIPTCVSPGVGLGSKKGAHLGL
GGATIGVGALARQRRNLTGNGAFGVPGYAGIGASGLGWEVQEDFEEFVDPLATVENTSTR
AFSSHPSRPFFLAGSSNTHIYLWEFGKEKATATYGVLPAANVPPPYALASISAVQFDHYG
HRFATAALDGTVCTWQLEVGGRSNIHPTESCLCLNGHASDVTYITSSGSVIAATGYSSNG
ANVVIWDTLAPPTTSRASIVCHEGGARSIAVFDNDIGSGSISPLIVTGGKNGDVGLHDFR
YIATGRTKRHNMNSNLPSNIDMQTGVGSQLGGQNPNGMLWYMPKAHLGSVTKISTIPHTS
LFLTGSKDGDIKLWDAKAAKLVCHWPKLHERRTFLQPSSRGFGGVVRAAVTDIQVVSHGF
LSCGGDGIVKFIQLKDKQCRTGSVTD
NT seq
7641 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaacaagcactgcctctcctactcgagcctcaattaaccccaccgaccacctc
ccactctctctcttcagatccgacatcattccacccgccccgacccgctctgcttccacc
atcgactggttacctgacttttccggttactcatgggttgcgtatggagcctcctctcta
ttagtgatctctcacttaccctctccactctctcccgaagaagccgctatcggtcccatt
cttcagcaagtcttcgagctctccggcgacgattcttcccctgtcaaatccgtttcctgg
tctccggtgaccccgtctattggtgagcttgcggccgcgtcagataactgtatctccgtg
ttctcgcatgattcagcgagctccaaaggttctttttgttggagtcagaatgcaatgctt
gtacaatctacaaaggtgggagcaatcacatggacaggttcgggggatgggatagtttcc
ggtggaactgatgtggttttgtggaggaggaggaacatgtcttgggaaagagcttggaag
tttaaaagagaccagcctcaaaatctggtttccgccacttggtcaattgagggaccttca
gctactgcagcttatccgagtaaagtagatgttaaaggatctgaccagactagcaattgt
gtgctagtatgttatggtaatggaacatctgattatgtgaaaactgagttgcatcaccct
cagcctgtctcaaagattcagtggaggccatcaacaggacgacaagcacagcgagataag
aaacatttgcgtagacatgtgctactaacatgctgcttagatggaacactaaggctatgg
actgaggtagacagtggaaaggtaagaaagttaggcaaggacaatcatgatcacaaaaca
atgagaaagtctttttgcattgctgctgtaattgagataaaccaggtcttgaagggaact
ctgggtatggatgtattttttagttggacatctgaaattgggggtatatatagaattgga
gaaggtattagccagacattttcagtagaaggcaatgggcatgacagagttggcagatgt
gagtggttaattgggtttggtccaggcagaggaattactttttgggccatccactgtctt
gatgatatctcacccataaggtttcctcgtgttacactatggaagacacaggaactagag
gaccttgaagcaggacatcttcatggtgctggttttgcaaatttcaatgcctggttactt
ctggataaggttgttgtcttgaggaactgcttgtctggcccgccaaatatatgcagtttg
atgcatctttcaccttgtaatttcttggtcaggtctttgttgtattcccaaatacctagt
gatatagaggatgcatcttttaataaatccaagatagataaatactcatcatgttcatct
ggtggtgttttaaatggaggtcatacaggaaaaatactacaggttgcaatgcaccctcat
atttatgaagtggaactggctgtttctttggattctgatggactgcttctattttggata
gtttctaccatttcaaactgcagtttgggtcccgcaaaactgatacctggatggaaactt
tctggaaaacttgcaacttacgactcttgttctaaatatacaagcttgaggtgggcacct
tcaacattgggcgaagaccatgttcttctagtgggacatgctggtggaatcgattgcttt
atagttaagatttctcaaatttgcaaagaaggcataatatgccactacataggcactata
cctctaactggtcatggtccatttgaggatggtcccactaatatctttgcagttccctta
ccctcttcttgcaacaagacattcagatacaatagatttttgctcttggcgatatggttg
aagggttttcaaccaatttcatgggaagttactttacattcttttgacttatcaggaggt
tgttgtgactgtaagtttgacgataaaaatactcctgtactgaattttgaaaatactttt
gctgatagaagatattgtgttggtgtcgatccatgctcatcacatttaccagagccatac
tgtgacgaccagattacaagtttttctgttgtgtgcccaggagatttcatttccatgcca
gaaagcttaggttccaataaagatctatgctctggtgttcctgcatatgtcatggcaaca
ggctgctctgatggtagtttgaaactgtggagaagtaacgcttctaaacagtcaactcct
caaatactgtgggagcttgtgggtaagtttgttgcacatcaaggcccagtaagtgctata
tgcttgactgcttgtggtcggaagattgcaaccatttctgcaggtagtcatttagatgat
accagcattcttcatgtatgggaagctgtacacgttataggggctgggagttttatatta
gaagataggatagctgttggaagagatgtcatttctttaaattggttaacattaggcaat
ggtcagttatttcttgggatttgcatgcataatgagatgcaggtatatgcacaaaagcat
catggtggacagactttgttgagccctcaatctttgaatgtcaacaactggtcttgcatt
gcagtttctcatactttccctgctatccgtgacttcctttgggggcccaatgcgacagcg
attattgtccatgatagctacattagtctactaagtcaatggttatttcttgaaggtgat
aagcaatggggcaaatatcctccaaatgttataagggaaggttataaaggtggaaaagac
aaggaaatcctttcttgcatattcacagatggtgaaattgatctcaaagaaacattaatt
gaaggtattagtggaggattcaaacccccaattcatgacaaacttgatgcaaaaaatgat
tgctcttcaagcagtttgtttgtagccatggctcaactcaaacatcattcaaatgctgtg
cgagggttttggagtctggtagaactagcagagaagttaacgggaactttagctatttat
caccctgaggcacttattatgaacatatattcaggaaactggaaacgtgcatatgtatct
gtgaggcatcttgttgaatatctttcttctggttgtgcggctgagaagatatacaactcc
gcagatcatagcaaaattgttccacagatccttttgtcaaattattttgagggatttctc
ctgaaagattctggttcaactaataagggatttcagtggagtgctgatgcaagattgcca
acttcatcctcacagttttttgcctataatttcacctctgatgcttctaataatatgttt
gctgcatcttcaacgaaatctgaacttagtgctttttctgaaactctagagaagtatgat
tttgagtctctaaccaatttagagaagtcagaaatgcttgcaattatagatcttgtcagc
gatgttcagcaccctgcttgtgcctatgcaaatcttgatgaacctgggcgaaggttctgg
gtgtcgttaaagtttcagcagttacatttttttcgaagctttggtagatctccttccgtg
gaagagttggttggtgactctaggctgatgagctgggccttccattctgactgtcaagaa
aatttattgagttcttttcttcctaatgaaccttcatggaaagaaatgcaaactcttggg
gttggattctggttcaccaatgttgcacaactgcgtgcaaggatggagaaattagcaaga
tcacaatatctgagaaagaaagatcccaaagattccgcccttttgtacattgtgttgaat
agacttccagtattgtctggtctttttaaaatcagcaaagatgaaaaggataaacccttg
gttgcatttctctctcgcaattttcaggaggaaaaaaataaagcagccgctttgaaaaat
gcgtatgtcttaatgggaagacatcagctggagttggccattgctttctttctgctagga
ggtgacacttattccgctatcaccatatgcgcaaagaattttggagatgaacagcttgcc
ttggtaatatgtcggcttattgagggtcgtggtggaccattggaacatcatttaattaca
aagtttatacttccatctgcaagtgagagaggcgacttctggcttgcaagcctgctagag
tgggaattgggcaatttttctcagtcttttctgaccatgcttggtctccaaacaagttcc
ttgactgacaagtctgctctttcgtcaaataatgctgctttcatggatccccatattggt
ctacattgtctttcactagcatccaaaaatagcatgaggaatgctgttggggagcaaaat
gctgcagttcttcgtaggtgggctacgattatggcagctactgccttcaacagatgtgga
cttcctcttgaagctttggagtgccttcaatcttctttgaacattcttgggggtattgat
ccaggaagcgtatcagatgttgatcagtctcaaattttacatggcattttgaatccattt
gctagtgaatcctgtaactggctgtcaggtgatgtggctttatgtctgcagtcccatggt
aaattagatttggctcttcagtatttttcaaaattgatgagtgagcatcctagttggctt
aacactatagtaggatccattcaacctggtacatcctccaaggattgtgaaattcaccaa
catgagaaattattagaagaatttcgagaaaaattatatacaggacttttaatgtttgag
cagaagtttttggtggttccttcctgcgtgatcaaaatgattttagtttggtcatgcagt
aatggattaccatttattgggcatgatctcatagttaactacgcttctcgaaaccataca
caagataagagcgatggtgttgaaagtttcatcttatatccgcttctgcataagccttgt
ttgaaatttatagaagatgcttccctgttactttcaagatttattacttcgtgcagcgta
acatgctttcaacctaaaccgttttatattgaaggaactatgtctgtcaaagttaaatcc
atctggtcagacgtgcatggattttattttcagggtatcatgcagacattgtggagttta
agagctgctatgaggattttttccagctcagaagatgtctcaagatcccttgttattctt
gatttatttgagtattatatatattttgcatctgcatggcttcagcgaaaatcaaaaggt
ctattgttgatggtacaacccctcttgataactttgactagtgggcacactccttatgaa
gttgatattgggaatctcaagagcattctccactacattgcagagttgccattcagtttg
tcaattgatgatgcaggatcaggacatgaggttgttaaatgttcatcacatgaacaagat
ggacaaacaatgctctcattttcagaagatgaaaaatggcacgtcgtaggggcttgtttg
tggatgcacatgtctagattcatgaaacaccaattgcatttgctgtccattaagcttgaa
gatggttgcttttctggggtttcacatggcaatgtttcttccttggcatctagtttgaca
atttttagatctgatagcatcagcagaaaggaagaaattgggttttgctcattgatattg
gctaagttactaaggactatgcttgtacatgtttcatcttatcatgtaaaactacttggg
ttattcctgcagcaggaagtagagaatagattacaaataccaactctagtatggatgaaa
gaatccagtctttctcaagccaaagctctctatcaggatgtcagtgcagacatgatgaat
agcaaagatgaattatcatcttttgatgtattgtgggatgcctgtgctgaccctcgcatg
gtatctgaaggttttgtgcaagaagaaataaatttatcgctgtttttcactcataaatca
tatgaaggatggagtgatgaatacatgagcataactggagagcttgaaactgaggatact
tatgaacatgaattaaaacttggcaatcgcccttctggcgatgaaattggatcgccttct
attggtctgttcaggaatggccgtgcttttttaagttcctggcagaaggatgcagttatg
acgaaggaggtgtctcattttcaaaatgctaaagtagtacataagagagatggagagctt
ttggaggcactgtgtatcaactctgttgatgaaaggcaagctgctctggccagcaaccgt
aagggaatagtttttttttcttgggaagatgggataccttttggagatcaatcagagtac
atatggtcagatgctgactggccatcaaatggctgggcaggtgctgaatcaaccccaatt
cctacatgcgtctctcctggtgttggtcttgggagcaagaaaggggcacaccttgggttg
ggtggggcaactattggtgtgggtgctttagcaagacaaaggagaaatttgacaggcaat
ggagcatttggcgttccaggttatgctggtattggtgcctcaggcttgggttgggaggtt
caagaggattttgaggagtttgttgatccactagctactgtggaaaatacaagtacaaga
gctttctccagtcacccctcaaggcctttctttttggctggttccagcaatacacatatt
tacctatgggagttcggtaaggaaaaagctactgcgacatatggggtgctccctgctgca
aatgttcccccaccatatgctcttgcatcaatatcagctgtgcagtttgatcactacgga
catagatttgctactgctgcattagatggaactgtctgcacttggcagctggaggttgga
ggaaggagcaacatccatccgacagaatcgtgtctctgcttgaacggccatgcatcggat
gtcacatacattacttccagtggatcagttattgctgcaactggatatagctctaacggt
gctaatgtggttatctgggatacattggctccacccacaacctcacgagcttccattgtt
tgtcatgaaggtggtgcccgctccattgctgtttttgataatgacattggaagtggttct
atttctcctcttattgtaactggtggtaaaaatggtgatgttggacttcatgacttccgg
tacatagcaactggaaggactaaaaggcacaacatgaacagcaatctcccttctaatatt
gacatgcagacaggagtcggtagccaattgggagggcagaatccaaacgggatgctgtgg
tacatgccaaaggctcatttaggaagtgtcaccaagatatccacaatccctcataccagt
ttgttcttgactggaagcaaggatggagacattaaactttgggacgccaaagcagccaag
ttggtttgccattggccaaaattgcatgaaagacgcacctttttgcaaccaagctcgcgg
ggttttggtggagttgtcagggctgcagtgacagatatacaagttgtttctcatggtttt
ctttcctgtggtggagatggcattgtaaagtttattcagctcaaagataagcaatgtagg
acaggatcagttactgattag
DBGET
integrated database retrieval system
