Populus nigra (Lombardy poplar): 133691284
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Entry
133691284 CDS
T10372
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133691284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133691284
04121 Ubiquitin system [BR:
pnz04121
]
133691284
03036 Chromosome and associated proteins [BR:
pnz03036
]
133691284
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133691284
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133691284
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133691284
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133691284
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133691284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
BRCT_2
zf-HC5HC2H_2
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-RING_6
RTT107_BRCT_5
Prok-RING_4
zf-C3HC4_4
zf-RING_10
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
133691284
NCBI-ProteinID:
XP_061967699
LinkDB
All DBs
Position
4:complement(24619501..24624955)
Genome browser
AA seq
729 aa
AA seq
DB search
MAGSVKQSVSSMNPWVLHLQKLGLELKCPLCLELLKRPFLLPCDHIFCNSCLPKTIQFGS
ECPLCKAQYGDSDLRCLPLVENMVTIYRSLDAAFSASILQSRSETGGVLKQCPASKSSDS
KDNKLVEAHWGDNSSSGQSKLMCNDVACALSNCLVGKGVRKNVAMGNCNVPMHVKDKEYG
VIGSVGVASNDKQNANSPPVGSQVRARGLRESKAFQMDLNQADQLSPRSPPSFGDNKDSE
NDSNDQGGDDSLQNYKAENLVQLNSDNKRRQERHNNSASEAEEGHLRDSKRHKKLNYSTS
DLGANNIGHIKPNAPPTENLITSSQLEIPAKLNNSFNACGFCHSFRITADTGPMLHFANG
KPVEGVEATLSDTIHVHAVCIEWAPQVYFVGETVKNLKAELARGAKLKCSKCGLKGAALG
CYLKSCKRSYHAPCAMEITKCRWDYENFLMLCTAHSSVKFPSEKSKAKKHNQKTSSVLSS
VAPQQSNFWVGSCNGAKKWVFCGSALSSEEKCLLVKFGSMIGVPVNKFWASNVTHVIAAT
DSDGACTRTLKYLMAILNGKWVLTIDWIKACMESMHPVDEENYEIILDCHGSRDGPKNGR
LSALNNAPKLFSGLSFCFVGDFVAGYKEGLQSLVIAAGGTLLKSEEELVEQRHDPLSPST
TLIVYNLDPPQGCKLGEEVSIIWQRTNEAQDLAAKVGSQVIGHTWLLESISSYKLQPFVN
WDSISNSDS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcgggctcagtgaaacagagcgttagctctatgaacccatgggttcttcatctccag
aagttgggtctcgagctcaaatgccctctctgcttggaattgttgaagcgaccctttttg
ctaccttgtgatcacattttctgcaattcatgtttgcccaaaacaatacagtttggatcc
gagtgtcctctctgtaaagctcaatatggcgactcagatttaaggtgtttgcctttggtt
gaaaacatggtgacaatctatagaagcttggatgcagctttcagtgccagtattttgcag
tctcgttctgagactggtggggttttgaagcagtgtccggcttcgaagagtagtgatagt
aaggataataaattagtggaagctcactggggggataattctagtagtggacaatctaaa
ttaatgtgcaatgatgtagcttgtgctctatcgaattgtttagttggaaaaggggttcga
aagaatgtagcgatgggtaattgcaatgtgccaatgcatgtcaaggataaagagtatggg
gtgattggtagtgtaggggttgcgtctaatgataaacagaatgccaattctccaccggta
ggctcgcaggtaagagctagggggcttcgtgaatccaaggcttttcaaatggacttgaat
caggcagatcagttgtcgcctagaagtcctccttcatttggtgataataaggattcagaa
aacgacagtaatgatcagggaggtgatgatagtctacaaaattataaagcagaaaacttg
gttcaactaaattctgacaacaaaagaagacaagagaggcataacaattctgcttctgaa
gccgaggaaggtcatttgagggattcaaagagacataagaagttgaactacagtacatcg
gatctgggtgcaaataatattggtcatatcaaaccaaatgcacctccaactgaaaatttg
ataaccagttctcaattagagattcctgcaaagttgaataactcgtttaatgcttgtgga
ttctgccactccttcagaatcacagcggatactggtccaatgttgcattttgcgaatgga
aagccagtagagggagttgaagcaactctatccgacactatacatgtgcatgctgtgtgt
attgaatgggcaccgcaagtctattttgttggtgaaactgttaagaatctgaaggcagaa
ctggccaggggtgcaaagcttaagtgcagcaaatgtgggctgaagggagcagctttaggc
tgctatctaaaatcatgcaagagaagttatcatgctccctgtgcaatggaaattactaaa
tgtcgatgggattatgaaaacttccttatgctttgcactgctcactcttcagtaaaattt
ccaagtgagaagtccaaggctaagaaacacaaccagaaaacttcttctgtgctgtcttca
gtcgccccacaacagtccaacttttgggtgggatcatgtaatggagcaaagaaatgggtt
ttctgtggatctgctctgtcttctgaggaaaagtgtcttttggtgaagtttggaagcatg
attggtgtgccagtgaacaaattctgggcatcaaatgtcacacatgtgattgcagccaca
gattcagatggggcatgcaccaggacgctgaaatatcttatggccattttgaatgggaaa
tgggttcttacaatagattggataaaggcttgcatggaatctatgcatcctgtggatgaa
gaaaattatgaaattattcttgactgccatggaagccgtgatggcccaaaaaatggcagg
cttagtgcactaaataatgcaccgaaacttttcagtggcttaagtttctgttttgttgga
gattttgtggctggctacaaagaaggtctccagagtctggttattgcggcaggaggtaca
cttttgaagagcgaggaagaattggtggaacaaagacatgacccgttatctccttcaaca
acactaattgtttataaccttgatcccccacaagggtgcaaattaggagaggaagtttca
attatttggcagagaaccaatgaagcacaggatttagctgctaaagttggatcccaagtc
attggtcacacgtggctgttggagtctatctcctcatacaagttacagccttttgtaaac
tgggacagcatcagcaattctgatagctag
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integrated database retrieval system
