KEGG   Populus nigra (Lombardy poplar): 133691301
Entry
133691301         CDS       T10372                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03030  DNA replication
pnz03410  Base excision repair
pnz03420  Nucleotide excision repair
pnz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    133691301
   03410 Base excision repair
    133691301
   03420 Nucleotide excision repair
    133691301
   03430 Mismatch repair
    133691301
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pnz03032]
    133691301
   03036 Chromosome and associated proteins [BR:pnz03036]
    133691301
   03400 DNA repair and recombination proteins [BR:pnz03400]
    133691301
DNA replication proteins [BR:pnz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    133691301
  DNA Replication Termination Factors
   ELG1-RFC complex
    133691301
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    133691301
DNA repair and recombination proteins [BR:pnz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     133691301
  Check point factors
   HRAD17(Rad24)-RFC complex
    133691301
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_22 AAA_lid_RFC1 AAA_11 AAA_16 ATPase_2 AAA_14 AAA_5 AAA_assoc_2 AAA_30 AAA_24 AAA_7 DUF815 nSTAND_NTPase5 RuvB_N AAA_19 bpMoxR ResIII nSTAND3 AAA_3 DNAX_ATPase_lid SLFN-g3_helicase TniB AAA_28 AAA_2 Mg_chelatase AAA_25 UBA_Rad5 TIP49 MCM nSTAND6 ABC_tran
Other DBs
NCBI-GeneID: 133691301
NCBI-ProteinID: XP_061967731
LinkDB
Position
4:complement(5737502..5741181)
AA seq 363 aa
MAEAIALMDIDEEENQNHLSKPNKGKNVVVPATPPGGKATPWVEKYRPQSLADVAAHRDI
IDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV
RKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
NKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALN
ILQSTHMASQQITEETVYLCTGNPLPQDVQQISHWLLNESFAESYKRISEIKTRKGLALV
DIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQLGSLIASFTRARSALVA
AAN
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggcggaggcgatcgcactcatggacattgacgaagaggagaaccagaaccacttatcg
aaaccaaacaaaggcaaaaacgtcgtcgtacccgccacaccacccggcggtaaagctact
ccctgggttgagaagtaccgtcctcaatcactcgccgatgtcgccgctcaccgtgacatt
atcgataccattgataggctgaccagtgaaaacagattaccgcatctcttgttatatggc
cctcctggcacgggcaaaacgtcaacaattcttgctgtggcgcgtaaactttacggagcg
cagtaccacaatatgattttggagttgaatgcatcagatgatagaggaatagacgttgtg
cggaagcaaatacaagatttcgctagtacccagagcttctcttttggcgcaaaggcatct
gtaaagttggttttacttgatgaagcagatgcaatgacaaaggatgcacaatttgccttg
cgtagagtgattgagaaatatacgaagaacaccaggtttgcacttatctgcaatcatgtg
aacaagattatcccagcactacagtctcgatgtactcgatttcgatttgctcctcttgat
ccaatgcatgttggtgaacgacttaaacatgtcatagaggctgaagggcttgatgtacca
gagagtggcctagaggcgcttaaatgtcttagcaatggtgacatgagaaaggctttgaat
atactgcagtcgactcacatggcttctcaacaaattacagaagaaactgtttacctgtgc
actggaaacccattgccccaagatgtgcagcaaataagccactggcttctgaatgaatct
tttgcagagagctataaacgaatttctgaaattaagacaaggaaaggtttggccttggtt
gatattgtaagagaagtgaccatgtttgttttcaagattaagatgcaatcagatatccga
gtgccattgatcaatgatttggctgatatagaatacaggttgagctttgggtgcaatgat
aagctacaacttggatcacttattgcttcctttactagggctcgatctgcattggttgca
gccgcaaattag

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