Populus nigra (Lombardy poplar): 133691597
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Entry
133691597 CDS
T10372
Name
(RefSeq) polyadenylate-binding protein 3-like
KO
K13126
polyadenylate-binding protein
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133691597
09123 Folding, sorting and degradation
03018 RNA degradation
133691597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133691597
03041 Spliceosome [BR:
pnz03041
]
133691597
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133691597
mRNA cycle factors
Stress granule specific factors
133691597
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Complex C specific factors
133691597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
RBD_DEAH11
RRM_5
RRM_RdRP1_2
RRM_7
RRM_MARF1
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
133691597
NCBI-ProteinID:
XP_061968160
LinkDB
All DBs
Position
4:4321610..4326063
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AA seq
648 aa
AA seq
DB search
MAAAVAVPVVTDQTAAVVAPAEETPAAEQFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVV
STRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVLNFTPLNGKPIRIMFSHRDPTTRRSGH
ANVFIKNLDTKIDNKTLHETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINR
LNGMLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITS
AIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELKAK
FEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFV
AFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQAPGLPTLPSGLP
GYHPGTPRLAPHQLYFGQGTPGMMPPQPAGYSFQPQLLPGMRAAVGPNFVMPYQLQRQGQ
QGQRIGMRPGGNHQQMQQQQLLHRNTNQGLRYVGNARNGIDSSVVPQGFVGPVMPLPFEA
SGMPITPSHAQPTTPVPISTLTTALASATPENRMMMLGEQLYPLVECLEPDHVAKVTGML
LEMDQTEVLHLIESPDALKKKVAEAMQVLQEAGASSVGDQPGSLALNE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcggttgcggtaccagtggttacggatcaaacagcggcagtggttgctcct
gcagaggaaacgcctgcagccgaacagtttccgaacaggtcgctctacgttggggatctg
gagcataacgtcaaagaaggacaactgtttgatctgtttagccaggtggcgccggttgtt
tccactagggtttgtagggatcaggctggactaacctcgctcggctatgcttatgtcaat
ttcagcaatcctcaagatgctgcaaaagcaatggaggttctgaacttcacccctttgaat
gggaaacctatcagaattatgttttctcatcgtgatcctacaacaaggagaagtggacat
gcaaatgtctttatcaagaatctggacactaaaattgataacaagaccttgcacgaaaca
tttgcttcctttgggcctgtcctttcctgcaaagtagctgttgacaacaatggtcaatca
aaaggttatggcttcatacagtttgaaaacgaggaagatgctcagagtgcaatcaaccgt
ttgaatggcatgttggtaaacgatagagaagtttatgttggaccttttgttcgacgccta
gaaaggattgaggctaatgggtcaccaaaatttactaatgtttatgttaagaatttgtct
gagacaacttctgatgaggaccttaagaaaattttcagcagttatggtgccatcaccagt
gcaattgttatgaaggaccaaaatgggaaatctagaggttttggttttgtgaacttccag
agcccagattctgctgctgctgctgttgagaagttgaatgggatgaccttcagtgataag
gtttggtatgttgggagggcccaaaggaaaggagaaagggaggcagagttgaaagccaag
tttgaacaggaaagaaatagcaggtatgagaaaatgaaggctgctaatctctacctaaaa
aatcttggtgacaccattgacgaagaaagattgaaggaattattttctgagtttggatct
ataacatcatgcaaggtcatgcttgatcaacaagggttaagtaagggctctggttttgtt
gccttttctacaccagaggaagcttcaagagctttgagtgaaatgaatggaaagatgata
ggaaagaaacccctgtatgtagccattgcccaacgcagagaagaaaggatggctcggctg
caggcacatttttcccaaattcaggcacctggactgccaactttaccttcaggacttcct
ggatatcatcctggcacacctaggcttgcaccacaccagctctattttggccaaggaact
cctggcatgatgccccctcagcctgcaggctacagtttccagccgcaactcttgcctgga
atgcgtgctgctgttggccccaactttgttatgccgtatcagctgcaaaggcaaggacaa
caggggcagaggattggtatgcggcctggagggaaccaccaacagatgcagcagcagcag
ctattgcaccggaatactaatcagggcttaagatacgtgggcaacgcaagaaatggcata
gattcgtctgtggttccacaaggttttgttggtccagtgatgccgttgccctttgaggct
tcagggatgcctataactcctagtcatgcccagccaaccactccagtgccaatttcaact
ctcacaaccgctctggcttctgctacaccggagaaccgcatgatgatgctgggtgaacag
ctttatccccttgtggaatgtctggagccagatcatgtggcaaaggtgactgggatgtta
ttggagatggatcaaacagaggtgctgcatcttattgaatctccagatgctctcaagaaa
aaggtggccgaggcaatgcaagtccttcaggaagctggtgcttctagcgttggtgatcaa
cctggctccttggcactcaatgaatga
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integrated database retrieval system
