Populus nigra (Lombardy poplar): 133691636
Help
Entry
133691636 CDS
T10372
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133691636
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133691636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
Motif
Other DBs
NCBI-GeneID:
133691636
NCBI-ProteinID:
XP_061968210
LinkDB
All DBs
Position
4:8219931..8224188
Genome browser
AA seq
643 aa
AA seq
DB search
MSTPRVQLLIEDQHVVMDNGILQVTLSNPGGIVTGIQYNGIDNLLEVLDLETNRGYWDLV
WSQAGSTGTTGTFDVFEGTTFRVIVENEEQVEISFTRTWDPSLEGKFVSLNLDKRFIMLR
NSSGFYSYAIFEHLADWPPFNLPQTRIVFQLRKDKFHYMVVADNRQRFMPLPDDRQPERG
EPLDFPEAVLLVDPVEPEFKGEVDDKYQYSCENKDLHVHGWICFDPPTGFWQITPSSEFR
SGGPLKQNLTSHVGPYTLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFMYLNSVMDKDN
ALSLWDDAKEQYLKEVHCWPYSFPASEDFPCSDLRGKISGRLQVLDRYISHECIAANDAY
VGLAPPGDVGSWQRECKGYQFWTKTDGDGSFCLGDIRTGDYNLYAWIPGFIGDYRNDTVI
TVTAGCEIDVGDLVYEPPRDGPTVWEIGIPDRSAAEFYIPDPNPKYINKLFINHPDRFRQ
YGLWERYADLYPDGDLVYKVGHSDYKKDWFFAQVNRKKDDGTLEGTTWQIKFKLDDVDQS
GAFKLRLALATANVAELQVRINDPKIDPPHFSTGEIGHDNTIARHGVHGLYRLYNVDVPG
TTLVEGENTVFLTQTPRTSPLQGIMYDYIRLEGPPPPDSKETL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactccaagggtgcagttgctcattgaagatcagcatgtggttatggataacggc
attcttcaagtcacactatcaaacccaggaggaatcgttaccggcattcagtataatggt
atagacaatttgcttgaagttcttgacttggaaactaacagaggatattgggaccttgtt
tggagtcaagcaggaagcacaggaacaacaggaacttttgacgtgtttgaaggaacaact
tttagggttatagtggaaaatgaagagcaagtagaaatctcattcacaagaacatgggat
ccctcccttgaaggcaaattcgtttccttaaacttggacaaaaggttcataatgcttagg
aattcttcaggattttattcctatgccatttttgagcatttagcagactggcctcccttc
aacctcccgcaaaccagaattgtcttccagctcagaaaagacaagtttcactacatggtc
gtagcagacaacaggcaaagattcatgccacttcctgatgacaggcaacctgaaagaggt
gagcccctagactttcccgaagcagtcttgcttgttgacccagtggagccagagttcaaa
ggagaggtagatgacaagtatcaatactcatgtgagaacaaagatctccatgttcatggg
tggatttgctttgatccacccacggggttctggcaaatcacacctagcagtgagttccga
tctggtggaccactcaagcagaaccttacctcccatgttggaccctatactctcgcaatg
tttctcagtgctcattatgctggagaggaccttgtgctaaaactcaacccaggtgaaccg
tggaagaaggtttttggaccagtttttatgtatcttaactctgttatggataaagataat
gcactttccctgtgggatgatgctaaagaacagtatttgaaggaagtccactgttggccg
tacagcttcccagcttctgaagattttccatgctccgatctacgtggtaaaatcagtggc
agattacaagtcctagataggtatataagccatgaatgcatagctgctaatgatgcttat
gtggggctagcaccgccaggagatgttggatcgtggcaaagagaatgcaagggataccaa
ttctggaccaaaacagatggggacggctctttctgtcttggcgatatacgcactggcgac
tacaatctttatgcatggattcctggtttcatcggcgattaccgtaatgatactgttatt
acagtaactgcaggttgtgaaatcgatgttggtgatcttgtatatgaacctccaagagat
ggtccaacagtgtgggaaataggcatacctgatcgatctgctgcagagttttacattcct
gatcctaacccaaagtatattaacaaacttttcatcaaccatcctgacaggtttagacag
tatgggctgtgggaaaggtatgctgatttatatcctgatggggatctggtatacaaagtt
ggtcacagtgactacaagaaagattggtttttcgctcaagtaaacaggaagaaagatgac
ggtacattagaaggaacgacatggcaaatcaagttcaagctggacgatgtagatcaaagc
ggcgcgttcaagttacgattggcactggcaacagccaacgttgcagaactgcaagttcgg
ataaacgatccaaaaatagatcctccccatttttcaaccggagaaattgggcatgacaac
acaatagcaaggcatggagtccatggcctctaccgcctttacaatgtagatgtgccaggc
actacgcttgtggaaggagaaaataccgtgtttctgacacaaacacctagaaccagccct
ttgcagggcatcatgtatgattatattcgcttagaaggccctccaccgcctgattccaag
gagacactttga
DBGET
integrated database retrieval system
