Populus nigra (Lombardy poplar): 133691652
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Entry
133691652 CDS
T10372
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133691652
Spliceosome [BR:
pnz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133691652
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_MalT
TPR_16
TPR_12
NRDE-2
UTP6_C
TPR_10
Motif
Other DBs
NCBI-GeneID:
133691652
NCBI-ProteinID:
XP_061968234
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All DBs
Position
4:complement(24479673..24489430)
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AA seq
812 aa
AA seq
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MGDSETVVTEPSAVMDYPAAGYASTGYADSGSVVVPGPGDFNVEGTGNFAASTVAAQGGH
TGNTYGADSSSVVPEARVGMNSSAENAAAGGYDSAVNGNVGTEAGVAVSVENGNAGEVLG
GAAAEQHFVDGSVPEMSAEEDHLWSIVKANSLDFDAWTALIDETEKVAGDRILKIRKVYD
AFLVEFPLCYGYWKKYADHEARLGFMDKVVEVYERAVLGVTYSVDIWLHYCMFAISTYGD
PETVRRLFERGLAYTGTDYMSYPLWDKYIEYEEVHAEWGRVAMIYTRILEIPNRKLDDYF
NRFKAFATSRPLSELKTAEEVAAVAPALSEDRSQADEGEVHPDAAEQPSKPVNAGLTEAE
ELEKYIAIREEIYKKAKEFDNKIFDFENAIRRPYFHVRPLNVAELENWHNYLDDIEREDD
FNKVVKLYERCVIACANYTEYWIRYVLCMEATGNMDLANNALARATQVFVKRQPEIHIFA
ARLKEQNGDVSGARAAYQVVHAEIAPGLLEAIIKHANMEHRLGNLEDAFSLYEQAIAIEK
GKEHSQVLPALYAQYARFVYLASNNVEKAREILLEGLENAQYSKPLLEALIHFETFLPLP
KRIDYLDSLVDKFILPSSDSVNAASAAEREELSCIFLEFLGIFGDAQSIKKAADRHAKFF
LPHRSKSELKKRHAEDYLASDKAKMAKPYPDATSPAQSLMGAYASAQNQWTAGYGVQPQA
WPPATQVQTQQWAPGYNQQAAYGAYSGYGGSYPNPQAPASVAQGAAYGGYPPTYPAQQAF
PQQSYAQPTAAAPLTQPQQPAAAPQPYYGTYY
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgagacagtagtaactgaaccgtcggcagtcatggattatccggcagct
gggtatgcgtctactggctacgctgattctggttcagttgttgttcctggccctggtgat
tttaatgtggagggcactggaaattttgctgcttctactgttgcagcacagggaggtcat
acgggaaatacgtatggtgcggactctagttctgttgtaccagaggctcgtgttggaatg
aacagtagtgctgaaaacgcagctgctggtggttatgattcggctgtgaatggaaatgtt
ggaactgaagctggagttgctgtatcagttgagaatggaaatgctggagaggttttgggt
ggagctgctgctgagcagcattttgtggatggttctgtgccagaaatgtcagctgaagag
gatcacctgtggagcattgtgaaggctaattctttggattttgatgcatggactgcctta
atagatgagacagagaaggtggctggggacaggatattgaaaattcgaaaagtgtatgat
gcttttttggtggaatttcctttgtgttatggttattggaagaagtatgcagatcatgaa
gcacgccttggttttatggacaaagttgttgaggtatatgaacgggctgttcttggggtc
acatattcggtggacatttggttgcattattgcatgtttgccatatccacatatggagat
ccagagactgttagaaggctttttgagcgaggattagcttatactggaacagattatatg
tcttatcccctctgggataagtacattgaatacgaagaggtgcatgcagagtggggccgt
gttgccatgatatacacacggatattggagattcctaacagaaagctggatgattatttc
aatagatttaaggcttttgctacaagccggcctttgtcagaattaaagactgctgaggaa
gttgctgctgtagcacctgcactttcggaggatagaagccaagcagacgagggagaggtt
catcctgatgcagctgaacagccttctaaacctgtaaatgctggcttaacagaagcagag
gagttggagaagtatatcgccattagagaggaaatatacaagaaagctaaagagttcgat
aataagatctttgactttgaaaatgctattaggaggccctactttcatgtgcggcccctt
aatgttgcagagctcgaaaactggcataactatctggatgatatagaaagagaggatgac
tttaataaggtggtcaagctatatgaaagatgtgtaattgcatgtgctaattataccgag
tattggatacgctatgtcttgtgcatggaagccactgggaacatggatcttgcaaataat
gctcttgctcgtgcaactcaagtatttgtcaagagacaaccagagattcacatttttgct
gcccgtctcaaagagcaaaatggagatgtatctggtgctcgagctgcttaccaagttgta
catgctgaaattgcacctggtcttcttgaagcaattattaagcatgcaaacatggagcat
cgattggggaatcttgaggatgccttctccttgtatgaacaggccatagccattgaaaag
ggaaaagagcattcacaagtgctgccagcattgtatgcacagtatgctcgattcgtatat
ttggcatcaaacaatgtagagaaagccagggagattctattagaaggacttgagaatgcc
caatattcaaaaccacttctcgaggctctgatacattttgagacatttctgccacttcca
aagcgaattgattatcttgattcactggtagataagttcattttgcccagctcagacagc
gtcaatgctgctagtgctgctgagagggaagaactatcctgcattttcttggagttttta
ggtatatttggagatgctcaatctataaagaaggctgctgatcggcatgccaagttcttc
ttaccccacaggagcaagtcagagttgaaaaagcgccatgcggaggattacctagcttca
gacaaggcaaaaatggccaaaccttaccctgatgcaacttcacctgcacagtctctgatg
ggtgcatatgcaagcgcacagaaccaatggacagctggttatggtgtacagcctcaagct
tggccaccggctacccaagtacagactcaacagtgggctccgggctataaccaacaagct
gcatatggcgcatatagtggttatggaggcagctaccctaatccccaagctcctgcatca
gttgcacaaggtgcagcttatggtggctatcctcctacctatcctgcccagcaggccttc
cctcaacaaagttatgcacaacccacagctgcggcaccattgactcagcctcagcagccg
gctgctgctccacaaccttactacgggacttactactga
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