Populus nigra (Lombardy poplar): 133691690
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Entry
133691690 CDS
T10372
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133691690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133691690
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133691690
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
133691690
NCBI-ProteinID:
XP_061968278
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Position
4:20648586..20655127
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AA seq
479 aa
AA seq
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MQSDSGKLFIGGISWDTNEERLKDYFQSFGEVVEAVIMKDRTTGRARGFGFVVFSDPSIA
ERVIKEKHSIDGRMVEAKKAVPRDDQNMLSRNSGGSIHGSPGPGRTKKIFVGGLASTVTE
SDFRKYFDQFGLITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVK
RAVPKELSPGPSRSPLGGYNYGLNRVNSLLNGYTQGYTPGAVGGYGLRMDDRFSPVAGGR
SGFPPFGSGYGMGLNFEPALSPSYGGDANFNSNLSYGRGMSPYYIGNTNNLARPVGYDGG
NGGNTSFFSSATRNLWGNGGLNYNTNSTSSNAYIGSGTGSLGGSTFGNSGANWGSSSLSG
QGGGNNVSNSSLNFGYGSGENSFGQGMGSYARNSGNNGAPTSSYAASNGSFDGAFADLYG
GSSDYRYPTWQPSNSERDGSGSFGYGLGNTTSDVPVQNSPGYADGYSVNKRQSNRGIAA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgacagtggcaagctattcattggtggaatttcatgggacaccaatgaagaa
aggctcaaggactattttcaatcttttggggaggtagtagaggctgtgataatgaaagat
cgcaccacagggcgtgcccgtggatttggctttgttgtcttctctgacccatctattgca
gagagagtcattaaagaaaaacacagcattgatggcagaatggttgaagcaaaaaaggct
gttcccagggatgatcagaacatgctgagcagaaacagtggcggtagcatccatggttct
cctggtccagggcgtacaaaaaagatctttgtaggaggcttagcatccactgttacagaa
agtgactttaggaaatattttgaccagtttgggctcatcacagatgttgtggtgatgtat
gatcataacacacagaggccaaggggatttgggttcatcacttatgattctgaggaggca
gtggacaaagttttgatgaagacttttcatgaactgaatggcaaaatggttgaggttaag
cgagctgttcccaaagagttatcacccggtcccagtcgcagcccacttggtggatataac
tatggcctaaatagggttaatagcctccttaatggctacactcaaggatatactccaggt
gcagttggaggttatggacttagaatggatgataggttcagtccggttgctggtggtcga
agtggtttccctccatttggttctggttatggaatgggtttgaattttgagccagcattg
agccctagttatgggggggatgcaaattttaatagcaatctcagctatggtcgaggaatg
agtccttactacattggtaataccaataaccttgctagacctgtaggatatgatggaggt
aatggaggaaatacttcatttttcagctcagcaacaagaaatctgtggggaaacgggggg
ctcaattataacaccaactctacaagttcaaatgcatacataggatctggaactggaagc
cttggaggaagcacctttggcaacagtggagctaattggggttcttcatctctttcaggt
caaggtggaggaaataatgtttctaatagcagtctgaattttgggtatggaagtggtgaa
aatagttttggtcagggcatgggtagttatgcaagaaatagtgggaacaatggggcccca
acatcatcatatgctgcatcaaatggtagctttgatggagcatttgctgacctttatggt
ggtagttcagattacaggtaccccacttggcagccgtcaaattccgagcgagatggatct
ggttcttttggttatggcctcgggaataccacctctgatgttccagtacaaaactctcct
ggttatgctgatggttatagtgttaataagagacagtcaaatagaggaattgctgcctag
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