Populus nigra (Lombardy poplar): 133691798
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Entry
133691798 CDS
T10372
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133691798
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133691798
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Av_adeno_fibre
BsuPI
Motif
Other DBs
NCBI-GeneID:
133691798
NCBI-ProteinID:
XP_061968376
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Position
4:8225604..8229841
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AA seq
659 aa
AA seq
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MSNQGVQLHIQERHVVMDNGILQVTLSKPEGIVTGIQYNGISNLLEVLNDESNRGYWDLV
WSKEGSTGTTGTSDALVPKCYSYLSSSSYVPPFRIKGESFRVVVENEEQVEISFTRMWDP
SLEGKLAPLNIDKRFIMLRNSSGFYSYAIYEHFKEWPAFNLPQTRIVFKLRKDKFHYMAV
ADNRQRCMPLPEDRLPKRGEPLAYPEAVLLVNPVEAEFKGEVDDKYQYSCENKDLQVHGW
ICFNPPVGFWQITPSNEFRSGGPLKQNLSSHVGPISLAMFLSAHYSGEDMVLKLKPGEPW
KKVFGPVFIYLNTLLDDENEPHWLWEDAKEQMLIEVQNWPYSFPASEDFPSSEQRGCVNG
RLQVQDRFISDYCIPGNGAYVGLAPPGDIGSWQRECKGYQFWTKADPEGYFSINDIRTGD
YNLYAWIPGFIGDYRNDEVITITPGCDLDLGDVIYKPPRDGPTLWEIGIPNRSAAEFYVP
DPDPKYINELYVNHPDRFRQYGLWERYADLYPDEDLVYTVGTSDYAKDWFFAQVTRKKDD
NSYQGTTWQIKFKLDNVQNSGSYKLRLALATANVAELQVRINSLETNPWSTGVIGHDNTI
TRHGIHGLYWLYNIEVPGSELVEEDNTIFLTQTMATSPFQGIMYDYIRLEGPPSSNSDN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccaaggggtgcagttgcatatccaagaacgtcatgtggtgatggataatggc
atactccaagtcacattatccaaaccagagggaattgtcactggaatacaatataatggc
atcagcaatttacttgaagttctcaatgatgaatccaatagaggatattgggatcttgta
tggagtaaagaaggaagcacaggaaccacgggaacatccgatgctttggtaccaaaatgt
tatagttacctcagttcttcctcgtatgtgccaccattcaggattaaaggagaaagtttt
agagtggtggtagaaaatgaggaacaagtagaaatctcattcactagaatgtgggatcct
tcactagagggcaagcttgctcccctgaacatagacaagaggtttattatgcttcgtaat
tcctctggcttctactcctatgccatttatgagcacttcaaggaatggcccgctttcaac
cttccccagaccaggattgtattcaagcttaggaaggacaagtttcactacatggcagtg
gccgataacaggcaaagatgcatgccattaccagaggaccggttaccaaaaagaggcgaa
ccccttgcttaccctgaagccgtcctacttgtcaatcctgtggaggctgaattcaaggga
gaggtggatgataaataccaatactcatgcgaaaataaagatcttcaggttcatggatgg
atatgcttcaacccccccgttggattctggcaaatcacacccagcaatgagttccgatct
ggaggacctctaaagcaaaaccttagctctcatgttggtcccatcagtcttgctatgttt
cttagtgcccattattcaggggaggatatggtgctgaaactaaaaccgggtgagccatgg
aagaaagtttttggccctgtttttatctatctcaatactttgttggatgatgaaaatgaa
ccacattggctatgggaggatgccaaggaacagatgttaattgaagttcagaattggccc
tatagtttccccgcttcagaggattttccatcatcagaacaacgtggttgcgtcaatggt
cgattacaagttcaagacaggtttattagtgattactgtataccaggcaatggtgcctat
gtggggttggcacctccaggagatattggatcatggcaaagagaatgcaagggctatcag
ttctggactaaggcagatccagaaggatatttttccattaacgatataagaactggtgac
tataatctttatgcatggattcctggttttattggagattaccgaaatgatgaagttatt
accataacaccaggttgtgatctggacttgggtgatgttatatacaagcccccgagagat
ggccctacattgtgggaaataggcataccgaaccgttctgccgcagaattctacgttcct
gaccccgatcctaagtatatcaatgaactttatgtcaaccaccctgacaggttcaggcag
tacggattatgggaaaggtatgcagatttataccctgatgaagatttggtttacacggtt
ggtacaagtgactacgcaaaagattggttcttcgctcaagttacaaggaagaaagatgac
aattcatatcaaggaactacatggcagatcaagttcaaacttgacaatgtacaaaacagt
ggatcatacaaactacgattagcacttgcaactgcaaatgttgctgaattgcaggttcgc
atcaatagtctagaaacaaatccatggtcaactggagtaattgggcatgacaacacaatt
acgagacatggaattcatggactctattggctttacaacatagaagtgccaggttctgag
ctcgtggaagaggataatactattttcttgactcaaactatggccacaagccctttccaa
ggaatcatgtatgactacatacgtttagaaggccccccatcttctaattctgacaactaa
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