Populus nigra (Lombardy poplar): 133692054
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Entry
133692054 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133692054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133692054
03036 Chromosome and associated proteins [BR:
pnz03036
]
133692054
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133692054
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133692054
mRNA degradation factors
5'-3' decay
Decapping complex
133692054
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133692054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
133692054
NCBI-ProteinID:
XP_061968709
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All DBs
Position
4:11827688..11835097
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AA seq
505 aa
AA seq
DB search
MNNNNRGRYPPGIGAGRGGGMNANPNFQSRVPQQQYVQRNFGQNHHQQQYYQHQQHHNQQ
QQQQQQQQQQQQQQWLRRNQLTAADSSFDEVEKTVQSEAVDSSSQDWKAKLKIPPADTRY
RTEDVTATKGNDFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTG
KTAAFCVPALEKIDQDNNFIQVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLK
DDIMRLYQPVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRF
LPSNRQILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGITQYYAFVEERQKVHCLN
TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR
NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNL
YRIEQELGTEIKQIPPHIDQAIYCQ
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaatagaggaagatatccgccggggatcggtgccggtagaggcggaggt
atgaacgcgaaccctaattttcaatcaagggttccgcaacagcagtatgtgcagagaaat
ttcggtcaaaatcatcaccaacaacaatactatcagcatcaacagcatcacaatcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcagtggttgaggaggaatcag
ttaactgctgcggattcgagttttgatgaggtcgagaagactgttcagtctgaggctgtt
gactcgagttcacaagattggaaggcaaagctaaagataccaccagcagatacgcgatac
agaactgaggatgtgacagccactaaggggaatgatttcgaggactattttctgaagcgt
gagttgcttatgggaatatacgagaagggttttgaaagaccatctcctattcaggaagag
agcataccaattgctcttactggtagcgatattcttgctagagctaaaaacgggacaggg
aaaacagctgcattttgcgtccctgccctggaaaaaattgaccaagacaacaattttatt
caagttgtgatacttgtgccaacacgtgagttggctcttcagacatcacaggtttgtaag
gagctagggaagcatttgaaaattcaagtgatggccaccactggcggtaccagtctaaaa
gatgacattatgcgtttatatcaaccagtccatttacttgtcggaactccaggaagaata
cttgatcttgcaaaaaagggcgtgtgtatattgaaaaactgttcaatgcttgttttggat
gaggccgataagcttttgtctccagagtttcaaccttcaatagagcagcttattcgtttt
cttccttcaaatcgtcagattttgatgttttcggccacatttcctgttactgttaaggat
tttaaagatagatatctagagaagccttatgttatcaatcttatggatgaacttactctc
aagggtattacacaatattatgctttcgttgaagaacgacagaaagtccattgcctgaac
actcttttctctaagctgcaaataaaccaatcaatcatcttttgcaactcagtgaaccgg
gtagaattactggccaagaagatcactgaacttggctattcatgtttctatatccatgca
aagatgttacaggaccatcgcaacagagtatttcatgacttccgcaatggtgcatgcagg
aatcttgtctgtactgatctttttaccaggggtatagacatccaagcagtgaatgttgtt
ataaactttgacttccccaagaactcagagacataccttcacagggttggtcgatcagga
aggtttggacaccttggtttagctgtgaatttgatcacttatgaggaccggtttaacctc
tataggattgagcaggaactaggaactgaaattaaacaaattcctccacatattgatcag
gcaatatattgccaataa
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