Populus nigra (Lombardy poplar): 133692130
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Entry
133692130 CDS
T10372
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133692130
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133692130
PBAF complex
133692130
GBAF(ncBAF) complex
133692130
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133692130
NCBI-ProteinID:
XP_061968826
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Position
4:complement(5687194..5693383)
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AA seq
803 aa
AA seq
DB search
MPASPSFPASDGRGKWKRRKRGDSQITRKPPKHHHQEEPEEPEDDDDAVEADDHNNNIVY
REDSEDPNPHQQPNGPDPNPQETEVLTDAGVRICDFPPVTRLAVNRPHASVMAIVAAERF
NLAGESSNRGQLAVNLENVSYGQLQAVSAVTAESVGSDLERSDGGNSGYVVTPPQIMDGK
GVVKRFWSRLHVVPMHSDWFSPLSVNRLERQVVPHFFSGKSSDHTPEKYMECRNRIVAKY
MENPEKRLTVSDCLGLVVSIDIEDLTRIFRFLDHWGIINYCAAPPSCESWSGGSYLREDP
NGEVHVPSASLKSIDSLIQFDKPRCRLKAADVYSSFSCHGDDFSDLDNRIRECLSENCCN
CCSQPLPSVFYQSQKEVDILLCSDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGENWSDQ
ETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGLLENIEVPRMSKPPSPS
SRDDSRRPHSSSNGSCLQSADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLA
ALSEDNRMDSERLHGREGGFHGEVANSIQQKEDGQHGSWGQNGAEVAPLSSEKVKGAAKA
GLAAAATKAKLFADHEEREIQRLSANIINHQFLIWLQLKRLELKLKQFAEVETFLMRECE
QVEKTRQRFAAERVRMLSTRIGPAGVTSQVNPAGVAPSMVNNNVGSNRQQVMPSSSSQPS
IPGYGNSNPTHPHNNQQVHPHMSYLQRGHPQPMFPLGPRLPMAAIQPSSSAPSNVMYNNA
PGNSQPNLNQMPRSVSGPSSGLG
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttctttccctgcttcagatggaaggggcaaatggaaaaggcgaaag
cgaggagactctcaaatcactcgaaaaccaccaaagcaccaccaccaagaagaacctgaa
gaacccgaagacgacgacgacgcggttgaggcagacgaccataacaataacatcgtctac
agagaagattccgaagacccgaacccacatcaacaacccaacggacccgatccaaaccct
caagagaccgaggttttaactgacgccggggtccgcatatgcgatttccctccggtcact
cggcttgctgtgaaccgccctcatgcgtctgtgatggcgattgtggcggccgagaggttc
aatttagctggagaaagcagtaatagaggccaattagctgtgaatctggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgacagcggagagtgttgggagtgatttggag
aggagtgatggagggaattcggggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttttggagtagattacatgtggttccgatgcattcagattggttt
tcaccgctctcggttaatcgactggagagacaggtggtgccacattttttctctggaaaa
tcttcagatcacacaccagagaaatacatggagtgtagaaaccgcattgttgctaaatat
atggagaatccagagaagaggctcacagtttctgattgtctaggattggtagtcagtatt
gacattgaagatttaactcgaatttttagatttcttgatcattggggaattatcaactac
tgtgcagctccaccaagttgcgaatcctggagtggggggtcctatttaagggaggatcca
aatggtgaggttcatgtaccgtcagcttccttaaagtctattgatagtttgatccaattt
gacaagcccagatgtaggctcaaggcagctgatgtttattcatcattttcatgtcatggt
gatgatttctctgacctggacaacagaattagagagtgcttatctgaaaattgctgcaat
tgttgttctcagcctcttccctctgttttctaccagtcacaaaaggaggttgatatacta
ctatgctctgattgcttccatgaggggagatttgtgactggtcattcaagcttagatttt
attaaggtagattcaacaaaagattatggtgatatagacggagaaaattggagtgatcag
gaaacattactactccttgaggcaatggagatttacaatgagaattggaatgaaattgca
gaacatgttggaaccaagtcaaaagcacaatgcatccttcactttctgcgtctgcctgta
gaggatggcctgttggaaaatattgaagttccaagaatgtccaagccacccagtccatct
agtagagatgatagcagaagaccacactcaagttcaaatggatcctgcctccaaagtgct
gatgctgaaaataggctaccttttgcaaattctggcaatccagttatggcattggttgct
tttctggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttggca
gcattgtctgaggataacaggatggattcagagagattacatggtagagaaggtggtttt
catggagaagttgcaaattcaattcaacaaaaagaagatggccagcatggttcatggggt
caaaatggggccgaggttgctcctttgtcttctgaaaaagttaaaggtgctgccaaagct
ggccttgctgctgcagcaacaaaggctaaactgtttgctgatcatgaagagcgggaaatt
cagagactatctgccaatatcataaatcatcagtttttgatatggttacagttgaagaga
ctggagcttaagctgaagcagtttgccgaagtggaaacctttctaatgagagagtgcgag
caagtggagaagacaaggcaacggtttgctgctgagcgggtccgcatgctatctacccgg
ataggacctgctggagtcacttcacaagtgaacccagctggtgttgctccttcgatggtt
aacaataatgtgggcagcaataggcagcaggtgatgccttcctcctcttcacaaccaagc
attccaggatatggcaacagtaatccaacccatccgcacaacaatcaacaagtccatcct
cacatgtcatatttgcaacggggacatccacagccaatgtttccattagggccgaggctg
cccatggcagctatacagccatcctcgtccgctccatcgaatgtcatgtacaacaacgcc
cctggaaattcacagcctaacctcaatcaaatgccgagatctgtgtcaggccctagttct
ggcttaggttga
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