Populus nigra (Lombardy poplar): 133692188
Help
Entry
133692188 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133692188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133692188
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133692188
Spliceosome [BR:
pnz03041
]
Complex A
U2 snRNP components
U2 related factors
133692188
Complex B
133692188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
133692188
NCBI-ProteinID:
XP_061968921
LinkDB
All DBs
Position
4:complement(222186..227523)
Genome browser
AA seq
1165 aa
AA seq
DB search
MEDVKHKSRKDDSERKEEKEDSKRSHRDRDRDRDRNGERHRDREKRERESIRRSERDKSS
DSDEKEREKEKHKDRDRDRDKDRAARSRDGDKERAKDRNRDRDKDREEKKDRDKDREEKR
DRDKDREEKRERAKEKEKDREREREREREKRERERERDRERERKERDREEREREKRERER
ERRTREREKCRELSSDSDDDSKDRDKKRRRRDDDDYKERVREQSISRSNRHRDNSEEIPR
KKSDEEDSDKNVIKTREEELEQEQKKLDEEMEKRRRRVQEWQELRRKKEETEREKHGEEA
DVNEPKTGKTWTLEGESDDEEAPPTGKSETDMDLEENAKPDEEVEDAMVVDTENDISAPQ
NEDDAVNGDEEIDPLDAFMNSMVLPEVEKLNSTLVTHTADDNKTGLKNKDKKEERINGEQ
RKKGSHKSLGRIVPGEDSDSDYGDLENGEDPLEEEDDDEFMKRVKKTKAEKLSIVDHSKI
DYNPFRKNFYIEVKEISRMTPEEVVACRKELELKLHGKDVPKPIKTWHQTGLTSKILETI
KKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVEAGEGPI
GLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI
DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV
ETLARKVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGKILIFVQ
SQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAARGLDVKD
LELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPQ
DLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAKKAQAKEYGYEDEKSDS
EDEDEVVRKSVGDVSQQTALAQQIAALAAVSKVPMPAPPISHSVAQLLSNGGLPVPPNPG
PAVVSVTGLPFVPNNEGAARAAALAAAMNLQHNLARIQADAMPEHYEAELEINDFPQNAR
WKVTHKETLGPISDWTGAAITTRGQFFPPGKVPGPGERKLYLFIEGPTEQSVKRAKADLK
RVLEDITNQTYQLPGGTQPGKYSVV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgtgaaacataaatctagaaaagatgattcggaacggaaggaggagaaagag
gattcaaagaggagtcatagggacagggacagggacagggacaggaatggagagaggcat
cgagacagagagaagagagaacgtgaaagcatcaggcgttctgagagagacaagagtagc
gattctgatgaaaaggaaagggagaaagagaagcataaagacagggatagagacagggat
aaggatagagcagcaaggagtagggatggtgataaagagagagctaaggacaggaacaga
gatagagacaaggacagagaggagaagaaggacagggacaaggacagagaggagaagagg
gatagggacaaggacagagaggagaagagggagagggcaaaggagaaagagaaagatagg
gaaagggaaagggaaagggaaagggagaagagggaacgtgaaagggagagagatagagaa
agggagaggaaggagcgtgacagagaagaaagggagagagagaagagggagagagaaagg
gagaggaggactagggaaagggaaaagtgtagggaattgagcagtgacagtgatgatgat
tccaaggatcgtgataagaagcggcgaagaagagatgatgatgactacaaggagagagtg
cgcgaacagagcattagcaggtcaaacaggcacagggataacagtgaagagatcccgagg
aaaaagagtgacgaggaggactctgataagaatgtgattaaaacccgagaagaggagtta
gaacaggagcagaagaaattggacgaggagatggagaagaggaggaggagagtccaggaa
tggcaagagctaaggaggaagaaggaagaaactgagagagaaaagcatggggaagaagct
gatgttaatgaacccaagactggtaaaacctggactcttgaaggagaatccgacgatgaa
gaagcacctcccaccggaaaatctgagacggatatggacctggaggaaaatgcaaaacct
gatgaagaagttgaagatgcaatggtagtggacactgagaatgacatctctgctccacaa
aatgaggatgatgccgttaatggggatgaggaaattgatccacttgatgcttttatgaat
tctatggtgttacctgaggttgagaagctaaacagtactctggttactcatactgctgat
gacaataaaacaggcttgaagaataaggataagaaggaagagcgaatcaatggagaacag
aggaagaaaggctctcataaatctctagggagaattgttccaggggaagattctgattca
gactatggggatcttgaaaatggtgaagatcctctagaggaggaggatgatgacgagttc
atgaagagggtgaagaaaacaaaagctgagaaactgtccattgttgaccactcaaagatt
gattacaatcctttccggaagaatttctatattgaagtgaaggagatctcgaggatgact
cctgaggaggttgttgcgtgtaggaaagaactggagttaaaattacatggaaaggatgtg
ccaaaaccaattaaaacctggcaccaaacaggactcacaagtaaaattttagagacgata
aagaaacttaattatgagaagccaatgacaattcaagctcaggccctgcctataatcatg
agtggccgggactgcataggcattgcaaagactggttcaggcaaaacccttgcgtttgtg
ctgccaatgctgaggcatatcaaggaccagcctcctgtggaagctggagaaggaccgatt
gggcttgtaatggcacccacaagggagcttgtgcagcagatccacagcgatataaagaag
tttgctaaggccctgagtatcagatgtgtgcctgtttatggaggttctggtgttgcccaa
caaattagtgaattaaaacgggggacagagatagttgtctgtactccaggcagaatgatt
gacatactgtgcaccagtggaggaaaaatcactaatcttcgcagagttacatatctggtt
atggatgaagctgatcggatgtttgacatggggtttgaacctcaaatcactagaattgtt
cagaatattcgcccagatcgtcaaactgtactcttttctgccactttccctcgacaggtt
gaaactttggctcgtaaagtactgaacaaacctgtggaaatacaggtcggtgggaggagt
gtggtgaataaggacatcactcagctggttgagttaagaacagaagatcaaaggtggctt
aggcttttagaactacttggtgaatggtaccagaagggaaaaattttaatatttgtccag
tcacaggacaaatgtgattcattgtttaggaacttactgaagtttggttacccttgcctc
tcacttcatggggctaaggatcagacagatcgtgaatccaccatttcagattttaagacc
aatgtctgcaatttgatgattgcaacaagtgttgcagccagaggtttagacgtgaaggat
ctagaattggtgatcaattatgatgctccaaaccactatgaggattatgttcaccgtgtt
ggtcggactggccgagctggtcgcaaaggctgtgccatcacatttatctccgaggatgat
gcaagatatgcaccagatcttgtaaaagcgttggaactctctgagcaagttgttccacaa
gatttgaaagctcttgctgatggttttatggcaaaagtgaatcagggtcttgagcaagcc
catggaacaggttatggtggaagtggttttaaattcaatgaagaggaggatgaaaagaga
atggcggcaaagaaagcacaggcaaaagaatatggctatgaggatgagaagtctgattca
gaagatgaagatgaagttgttcggaagtcagtcggtgacgtctcgcagcagactgccctt
gctcagcagatagctgctcttgctgctgtctcaaaagtccccatgcctgcaccaccaatt
tctcactctgttgctcaattgctttctaatggtggattacctgttcctcccaatccaggt
ccagctgttgtttctgttactgggctgccttttgttccaaataatgaaggggcagccagg
gcagcagcacttgcagctgccatgaatttgcaacacaacctggcaaggatccaagctgat
gcaatgcctgaacattatgaagcagagctggaaatcaatgattttccccaaaatgctcgg
tggaaggttacccacaaggaaacattgggcccaatttcagattggactggggctgccatt
actaccagggggcagttttttccaccaggcaaggtgccgggaccaggagagcgcaagctc
tacttgttcattgagggtcctactgaacagtctgtcaagagagctaaagctgacctaaaa
cgtgttttggaagacatcacgaaccagacataccaacttcctggtggaactcaaccagga
aaatactcggttgtatga
DBGET
integrated database retrieval system
