KEGG   Populus nigra (Lombardy poplar): 133692296
Entry
133692296         CDS       T10372                                 
Name
(RefSeq) protein VACUOLELESS1-like
  KO
K20180  vacuolar protein sorting-associated protein 16
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    133692296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pnz04131]
    133692296
Membrane trafficking [BR:pnz04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    133692296
   Hops complex
    133692296
SSDB
Motif
Pfam: Vps16_N Vps16_C
Other DBs
NCBI-GeneID: 133692296
NCBI-ProteinID: XP_061969117
LinkDB
Position
4:complement(3975719..3983361)
AA seq 844 aa
MSNVSVAAEWQLLTDRYYRKPELYPMRWKHIDLSRNKVACAPFGGPIALIRDDSKIVQLH
AESALRKLRIFNSAGVLLSETVWKHPGGRLIGMSWTEDQTLICIVQDGTIYRYNVHGECL
EPNFSMGKDCFEQNVVDCVFWGNGVVCLTEAGKLFCVPDFKEIKPCKLAEIGVGVEELPH
CMAVIEPQYTVSGNVEVLLGVGSGFVIVDEDEVRFIDEEIVGGAVQKIAVSHNGRFLACF
MHDGRFLVMNTEFINFTNYQCESALPPEQMAWCGLDSVLLYWDDVLLMVGPSGDSVSYFN
DEPVIFIPECDGVRVLSNTSMEFVQRVPDSTVSIFKIGSTSPASLLFDALDHFDRRSAKA
DENLRLIRSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSNFKRDHIQEMCKTL
RVLNAVRDPEIGIPLSIEQYKLLSAPVLVGRLINAHQHLLALRISEYVGLNQEVVVMHWA
CAKITASLAIPDAALLEILLDKLKLCKGMSYAAVAAHADRSGRRKLAAMLVDHEPHSSKQ
VPLLLSIAEEETALVKATESGDTDLVYLVLFHIWQKSSALEFFGTIQARALARDLFIAYA
RYYKHEFLKDFFLSTGQLKEVALLLWKESWEIGKNSMASKGSPLHGPRIKLIEKAHNLFS
ETKEHNFESKAAEEHAKLLRIQHELEVSTKQPIFVDSSISDTIRTCIALGNHRAAMKVKT
EFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPNGFRPFVEACIDAAEKGEALKYIP
KLADPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLSFAQNTAASSIFDTLRDRLSF
QGVS
NT seq 2535 nt   +upstreamnt  +downstreamnt
atgtcaaacgtctctgtcgcggctgaatggcaactcctaacagaccggtattacagaaaa
cccgaactctacccaatgcgatggaaacacatagacttaagccgtaataaagtagcctgc
gcacccttcggcggtccaatcgctttaattcgtgacgattccaaaatcgtccagctccac
gccgaatccgccctccgaaaactccgaatttttaactccgctggtgttctcctctctgaa
acagtctggaaacacccaggcggccgattgatcggaatgtcatggaccgaagaccaaacc
ctaatttgcatagtccaggacggcacgatctaccgttacaacgtccacggcgagtgtcta
gaacctaatttctccatgggaaaagattgctttgaacagaatgtggtggattgtgtgttt
tgggggaacggtgtcgtgtgcttgacggaagctgggaagttattctgtgttcctgatttt
aaggagattaagccttgcaagctcgcagaaataggggttggcgttgaggaattgccacat
tgtatggcggttatagaaccgcagtatacagtttcgggtaatgtggaggttttgttagga
gtaggaagtggatttgtgattgttgatgaggatgaggtgaggttcattgatgaggaaata
gttggtggtgccgtgcagaaaattgctgtttcccacaacgggaggtttttagcgtgtttt
atgcatgatgggagatttcttgttatgaatactgagtttataaattttactaattatcaa
tgtgagtctgcgcttccaccggagcagatggcttggtgtggattggatagtgtgttgctt
tattgggatgatgtgcttttgatggtaggaccttctggggattctgtatcatattttaat
gatgaacctgtaatttttatccctgagtgtgatggagtgagggtattgtcaaatacgagt
atggagtttgtacaacgggtgcctgattctaccgtgtctatatttaagataggaagcacg
tctcctgcatcattgttgtttgatgctttggatcattttgataggcgaagtgctaaggct
gatgagaatttgagattgatacgctcatctttgcctgaggctgttgaagcatgtattgat
gctgcgggtcatgaatttgatgtttcccgtcagcggacgctgctaagagctgcgagctat
ggtcaagccttttgcagcaattttaaacgtgaccacattcaagagatgtgcaaaactttg
cgcgtcttaaacgccgtacgtgaccctgagattggcatccctctaagtatcgagcagtat
aagttgctttccgcacccgttctggttggtcgtttgattaacgctcaccaacatcttctt
gcactgcggatatcagaatacgtaggattgaatcaagaagtagtagtaatgcactgggca
tgcgcaaaaataacagcttcattagcaattcctgatgcagccctccttgaaatcttactt
gataagctgaaattatgcaagggcatgtcctatgcagctgttgctgctcatgcagatagg
agtggccgccggaagttggctgcaatgcttgttgatcatgaaccacactcctcaaaacag
gttcctctattgttaagtattgcggaggaagaaacagctctagtgaaggcaactgaaagt
ggtgacactgaccttgtttatcttgtcctatttcatatctggcaaaagagttcagccttg
gagttttttggaacaatacaagccagagcccttgctcgtgatttattcatagcttatgca
cggtattataaacatgaattcttgaaggacttcttcctatcaacaggacaacttaaagag
gtggctcttctcctatggaaagaatcatgggaaatagggaaaaattcaatggccagtaaa
ggatccccgcttcatggtccacgcataaaactcattgaaaaggcccacaatcttttttct
gagaccaaggaacataactttgagtcaaaagctgctgaagaacatgcaaagttactgaga
attcaacatgagttagaagtctctacaaaacagcccatttttgttgattcaagcatcagt
gatacaattcgaacatgtattgcattgggaaaccatagagctgctatgaaagtgaaaaca
gagtttaaggtttctgagaagagatggtattggcttaaagtttttgctttggcaacaatt
agagactgggatgctctagaaaaattttcgaaggagaagagaccaccaaatggtttcagg
ccatttgtggaggcatgcattgatgcggctgagaaaggtgaagctctgaaatatatccca
aaacttgcagatcccagagaaagagctgaggcatatgctcggattggcatggccaaggaa
gctgccgatgctgcttctcaggcaaaagatggtgaattgcttggtcgattgaaattgagt
tttgcacaaaatacagctgcttcatcaatttttgacactctacgagatcgattgtccttc
caaggagtttcatag

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