Populus nigra (Lombardy poplar): 133692296
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Entry
133692296 CDS
T10372
Name
(RefSeq) protein VACUOLELESS1-like
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133692296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133692296
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133692296
Hops complex
133692296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
133692296
NCBI-ProteinID:
XP_061969117
LinkDB
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Position
4:complement(3975719..3983361)
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AA seq
844 aa
AA seq
DB search
MSNVSVAAEWQLLTDRYYRKPELYPMRWKHIDLSRNKVACAPFGGPIALIRDDSKIVQLH
AESALRKLRIFNSAGVLLSETVWKHPGGRLIGMSWTEDQTLICIVQDGTIYRYNVHGECL
EPNFSMGKDCFEQNVVDCVFWGNGVVCLTEAGKLFCVPDFKEIKPCKLAEIGVGVEELPH
CMAVIEPQYTVSGNVEVLLGVGSGFVIVDEDEVRFIDEEIVGGAVQKIAVSHNGRFLACF
MHDGRFLVMNTEFINFTNYQCESALPPEQMAWCGLDSVLLYWDDVLLMVGPSGDSVSYFN
DEPVIFIPECDGVRVLSNTSMEFVQRVPDSTVSIFKIGSTSPASLLFDALDHFDRRSAKA
DENLRLIRSSLPEAVEACIDAAGHEFDVSRQRTLLRAASYGQAFCSNFKRDHIQEMCKTL
RVLNAVRDPEIGIPLSIEQYKLLSAPVLVGRLINAHQHLLALRISEYVGLNQEVVVMHWA
CAKITASLAIPDAALLEILLDKLKLCKGMSYAAVAAHADRSGRRKLAAMLVDHEPHSSKQ
VPLLLSIAEEETALVKATESGDTDLVYLVLFHIWQKSSALEFFGTIQARALARDLFIAYA
RYYKHEFLKDFFLSTGQLKEVALLLWKESWEIGKNSMASKGSPLHGPRIKLIEKAHNLFS
ETKEHNFESKAAEEHAKLLRIQHELEVSTKQPIFVDSSISDTIRTCIALGNHRAAMKVKT
EFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPNGFRPFVEACIDAAEKGEALKYIP
KLADPRERAEAYARIGMAKEAADAASQAKDGELLGRLKLSFAQNTAASSIFDTLRDRLSF
QGVS
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgtctctgtcgcggctgaatggcaactcctaacagaccggtattacagaaaa
cccgaactctacccaatgcgatggaaacacatagacttaagccgtaataaagtagcctgc
gcacccttcggcggtccaatcgctttaattcgtgacgattccaaaatcgtccagctccac
gccgaatccgccctccgaaaactccgaatttttaactccgctggtgttctcctctctgaa
acagtctggaaacacccaggcggccgattgatcggaatgtcatggaccgaagaccaaacc
ctaatttgcatagtccaggacggcacgatctaccgttacaacgtccacggcgagtgtcta
gaacctaatttctccatgggaaaagattgctttgaacagaatgtggtggattgtgtgttt
tgggggaacggtgtcgtgtgcttgacggaagctgggaagttattctgtgttcctgatttt
aaggagattaagccttgcaagctcgcagaaataggggttggcgttgaggaattgccacat
tgtatggcggttatagaaccgcagtatacagtttcgggtaatgtggaggttttgttagga
gtaggaagtggatttgtgattgttgatgaggatgaggtgaggttcattgatgaggaaata
gttggtggtgccgtgcagaaaattgctgtttcccacaacgggaggtttttagcgtgtttt
atgcatgatgggagatttcttgttatgaatactgagtttataaattttactaattatcaa
tgtgagtctgcgcttccaccggagcagatggcttggtgtggattggatagtgtgttgctt
tattgggatgatgtgcttttgatggtaggaccttctggggattctgtatcatattttaat
gatgaacctgtaatttttatccctgagtgtgatggagtgagggtattgtcaaatacgagt
atggagtttgtacaacgggtgcctgattctaccgtgtctatatttaagataggaagcacg
tctcctgcatcattgttgtttgatgctttggatcattttgataggcgaagtgctaaggct
gatgagaatttgagattgatacgctcatctttgcctgaggctgttgaagcatgtattgat
gctgcgggtcatgaatttgatgtttcccgtcagcggacgctgctaagagctgcgagctat
ggtcaagccttttgcagcaattttaaacgtgaccacattcaagagatgtgcaaaactttg
cgcgtcttaaacgccgtacgtgaccctgagattggcatccctctaagtatcgagcagtat
aagttgctttccgcacccgttctggttggtcgtttgattaacgctcaccaacatcttctt
gcactgcggatatcagaatacgtaggattgaatcaagaagtagtagtaatgcactgggca
tgcgcaaaaataacagcttcattagcaattcctgatgcagccctccttgaaatcttactt
gataagctgaaattatgcaagggcatgtcctatgcagctgttgctgctcatgcagatagg
agtggccgccggaagttggctgcaatgcttgttgatcatgaaccacactcctcaaaacag
gttcctctattgttaagtattgcggaggaagaaacagctctagtgaaggcaactgaaagt
ggtgacactgaccttgtttatcttgtcctatttcatatctggcaaaagagttcagccttg
gagttttttggaacaatacaagccagagcccttgctcgtgatttattcatagcttatgca
cggtattataaacatgaattcttgaaggacttcttcctatcaacaggacaacttaaagag
gtggctcttctcctatggaaagaatcatgggaaatagggaaaaattcaatggccagtaaa
ggatccccgcttcatggtccacgcataaaactcattgaaaaggcccacaatcttttttct
gagaccaaggaacataactttgagtcaaaagctgctgaagaacatgcaaagttactgaga
attcaacatgagttagaagtctctacaaaacagcccatttttgttgattcaagcatcagt
gatacaattcgaacatgtattgcattgggaaaccatagagctgctatgaaagtgaaaaca
gagtttaaggtttctgagaagagatggtattggcttaaagtttttgctttggcaacaatt
agagactgggatgctctagaaaaattttcgaaggagaagagaccaccaaatggtttcagg
ccatttgtggaggcatgcattgatgcggctgagaaaggtgaagctctgaaatatatccca
aaacttgcagatcccagagaaagagctgaggcatatgctcggattggcatggccaaggaa
gctgccgatgctgcttctcaggcaaaagatggtgaattgcttggtcgattgaaattgagt
tttgcacaaaatacagctgcttcatcaatttttgacactctacgagatcgattgtccttc
caaggagtttcatag
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