Populus nigra (Lombardy poplar): 133692315
Help
Entry
133692315 CDS
T10372
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133692315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133692315
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
133692315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_14
TPR_9
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_19
TPR_20
TPR_12
DUF2989
BTAD
DUF6584
TPR_7
Motif
Other DBs
NCBI-GeneID:
133692315
NCBI-ProteinID:
XP_061969154
LinkDB
All DBs
Position
4:complement(111090..120200)
Genome browser
AA seq
1186 aa
AA seq
DB search
MLKSGEEQEEDLEKQRAAVVELRELEKSVEANPDDPSLRFNLAVYLWERCECKEKAAEHF
VVAVKLNPQNATAFKYLGHYYYEKEKVRALKCYQRAVSLNPDDSQSGDALCDILDQTGKE
TLELSLCTEASQKSPRAFWAFRRLGYIHLHHNRCSEAVHTLQHAIRGFPTSPDLWEALGL
AYQKLGMYTAATKSYGRAIELEDRRVFALIQSGNIFLTLGNFRKGVEQFQRALEISPQNV
SANYGLASGLLAWSKECMNMGAFRWGASLLEDACKVADKIAQLAGNFSCIWKLHGDIQLN
YAKCFPWMEDDQSVEFDVETFHASILTWKQTCYLASTFAKRSYQRALHLAPWQANLYIDI
GIASDLISSTNENYGHDQHPWQLSEKMVLGALLLEGDNYEFWVALGCLSGHNALRQHALI
RGLQLDVSLAVAWAYLGKLYREEGEKNLARLAFDCSRSIDPSLSLPWAGMSADSQIRQLT
PEEAFESCSRAVQILPVAEFQIGLAKLAFISGSLASSQVFGAIRQAVQKAPHYPETHNLH
GLVCEARSEYQAAITSFRLARCAINISSGDTSKSRFQEIAVNLARSLSKAGYAADAVQEC
ESLRKKGMLDSEGMQIYAFCLWQLGENDHALSVVRNLASSVSAMEQALAASSVSFICRML
YYISGLDLAVSSILKMPKEFLQSTKVWIVASAIHALDHSNRLAQAVSSSHYSLLSHDEII
EIHYLTALAKLVKHGSDYCLGFQSGISHIKKALHSYPNSNLLRNLLGHLLLSCEEWKETH
VASRCCVTEAPNCASKQGLKSGCEILGAGAVACYAIGNKDPKFSYPACGYQCLNGPAAVQ
ELQKYMRQEPWNHRAQYLLILNLLQKAREERFPSKICAILERLILVALSNEFYSRESMSY
QYQKFQLLLCASEISLQGGNIAGCIKHAKNASSLLLPNNYLFFGHLLLCRAYAAVDDYTS
LQQQYIRCLELKTDYNIGWMCLKIIESLYNVESDSKISVLSLKECSKEWKNSWNMWIAVF
NLVLGLISLWKEEYFSAEESLVQACSLASSESCLFLCHGVACIKLARQFCSSDYLSLAVS
SLTSAHATSTIPLPIVSLLLAQAEGSLGSKQNWEKNLRFEWYSWPPEMRPAELFFQMHLL
SIQPEAGFKTPSTVELCQSPLKWVLRAIHTNPSSLRYWNILRKLME
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatcgggagaagaacaagaagaagatttagaaaagcaaagagctgcagttgtg
gagttgagagagttagagaagtcagtagaagccaatcctgatgacccctctcttcgattc
aacctcgcagtgtatttgtgggaaagatgcgaatgcaaggagaaggcagcagaacatttt
gttgtagcagtgaaactgaaccctcagaatgcaactgctttcaaatatttgggtcattat
tactacgagaaggagaaggtcagggctctcaaatgctaccagagggctgtctccctcaac
ccagacgattctcaaagcggagatgcactttgtgatattttggaccagactggaaaggag
accctggagctctctctctgcactgaagcctctcaaaaatcaccaagagccttttgggct
ttcaggagactgggttacattcacctccaccataatagatgctctgaagctgttcatact
cttcagcatgccattcgaggttttcccacctctcctgatttatgggaagctttgggtctt
gcttaccagaaacttggcatgtatactgctgctactaagtcttatggacgagccattgag
ttggaggataggagagtttttgctctcattcaaagtggaaatatcttcttgacgctcgga
aatttccgaaagggagttgagcagtttcagcgagctttggagatctcacctcaaaatgtg
tctgcaaactatgggttagcttctggactccttgcttggtcaaaggaatgtatgaatatg
ggtgcatttaggtggggagcttcattgttagaggatgcgtgcaaggttgccgataaaatt
gctcagctggctggaaatttttcatgtatctggaaattgcatggtgacattcagcttaac
tacgcaaagtgttttccatggatggaagatgaccagagtgtagaatttgatgttgagact
ttccatgcttccatccttacctggaagcaaacttgctatttggcctccacatttgccaaa
aggtcgtaccaacgtgctctgcacttggctccatggcaagctaacctttatattgacatt
ggaattgcttcagatctcatttcttctacgaatgagaattatgggcacgaccagcatcct
tggcagctatcggaaaagatggttctgggggccttgttactcgagggtgacaattatgag
ttctgggtggcactgggatgtttatctggtcataatgccttgagacagcatgccttgatc
aggggattgcaattggatgtctccttagctgttgcttgggcatatcttgggaagctttac
agagaagaaggagagaagaacttggcaaggttggcatttgattgcagcagaagtatagat
ccttcactttcattgccatgggcaggcatgtcagctgatagtcaaattaggcagttgaca
ccagaggaggctttcgagagctgttcacgagctgtgcagatacttcctgtcgcggagttc
caaattggtcttgctaaacttgcttttatttcagggagccttgcgtcttcacaggttttt
ggagccatccggcaggcagtccagaaagcccctcactatcccgaaactcataacttgcat
ggtctagtttgtgaggcacgatctgagtatcaggctgctattacttcatttcgtctagca
cgctgtgcaatcaacatttcttcaggtgacacatcaaaatctcgtttccaagagatagca
gttaatttggcacgatctctgagtaaggctgggtatgctgctgatgctgtacaagaatgt
gaaagtttgagaaaaaaaggtatgcttgattcagaaggtatgcagatatatgctttctgt
ttatggcaacttggtgagaatgaccatgcgctctctgtggtaagaaatctggcttccagt
gtttcagcaatggaacaagcacttgcagcatcttctgttagttttatctgcagaatgctg
tattacatttctggactggatttggcagtttccagcattctgaaaatgccaaaagaattt
ctccagagtacaaaagtctggattgtagcatctgccattcatgctcttgatcacagtaat
cggcttgcacaggctgtttcaagcagtcactactctcttttatcccatgatgagatcatt
gaaatacactatttaacagctcttgctaagctggttaaacatggatcagattattgcctt
ggatttcagagtggaattagccacattaaaaaagctcttcacagttaccccaatagtaat
ttgcttaggaatctactcggtcatcttttgctatcatgtgaagaatggaaagaaactcat
gtagctagtaggtgctgcgtcacagaagctcctaactgtgcaagcaaacaaggtttaaag
tcaggatgtgaaattcttggtgctggggcagttgcttgctatgcaattggcaataaagat
ccaaaattttcttacccagcatgtggttatcaatgccttaatggacctgcagctgtccaa
gaacttcagaaatacatgcgccaagaaccttggaaccatagggctcaatacttgcttata
cttaatcttctacagaaggctcgggaagagagattccctagcaaaatttgtgccatactt
gagcgtttaattttggtggcgctttccaatgagttctattcaagagaaagcatgtcttat
caatatcaaaagtttcagcttttgctttgtgcttctgagatcagtttgcaaggtggaaat
atagcaggctgtatcaaacatgctaaaaatgcttcctcacttttgcttcctaataactac
ctgttttttggacacttgctgctatgtcgtgcctatgctgcagtggatgattatacaagc
ctccagcaacagtatataagatgcctagaactgaagacagattataatatagggtggatg
tgtcttaaaattattgaatctctgtataatgtggaaagtgattcaaaaatctcagtgttg
agcctcaaggaatgctcgaaagagtggaagaattcatggaatatgtggatagctgtattt
aatttggttctgggattaatatctttatggaaggaggagtacttttcagctgaagaatcc
cttgtgcaagcttgttcgctggccagttctgagagctgcctttttctctgccatggtgta
gcatgtataaagcttgccagacagttttgtagctctgattacttatctcttgctgtaagt
agcctcaccagtgctcatgcgacttctaccatccccttgcctattgtatcgttactgtta
gcacaagcagaagggagccttggctcaaagcaaaattgggagaagaacctccgctttgaa
tggtattcttggccaccagaaatgagacctgcagaactcttctttcaaatgcatttgctt
tcaatacaaccagaagctgggtttaaaactccatccacggtggaattatgtcaaagccca
cttaaatgggttcttcgggcaatccatacaaatccgtcttctttgagatattggaacatc
ctgcgtaagcttatggaatga
DBGET
integrated database retrieval system
