Populus nigra (Lombardy poplar): 133692355
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Entry
133692355 CDS
T10372
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133692355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133692355
Spliceosome [BR:
pnz03041
]
Common components
Common spliceosomal components
SR proteins
133692355
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
133692355
NCBI-ProteinID:
XP_061969210
LinkDB
All DBs
Position
4:16821458..16827139
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AA seq
300 aa
AA seq
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MSSRASRTLYVGNLPGDIREKEVEDLFYKYGPVAHIDLKIPPRPPGYAFVEFEEARDAED
AIRGRDGYDFDGHRLRVELAHGGRGHSSSDRHSSYSGGRGRGGASRRSEYRVVVTGLPSS
ASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYEDMKYAIKKLDDSEFRNAFSQAY
VRVREYDSKRDSSRSPGRDRSHSRGRSDSRSRSLSRSRSRSKSPKNKSSHRSSARSPPRS
VSRSRSGSRPRSLSRSRSRSRSPLPSRQKRGSKSPKKPSVSRSPSRSRSRSRSRSKSLSR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgagcgagcaggactctatatgttgggaatctgcctggcgatattcgcgaa
aaagaagtcgaagatttattctacaagtatggacctgttgcacacattgatttgaagatc
ccaccaagaccccctggttatgcctttgttgagtttgaagaggctcgagatgctgaggat
gcaattcgcggtcgtgatggctatgattttgatgggcatcgtttaagggtggaacttgca
catggtgggcgtggacattcatcctcagatcgtcatagtagttatagtggtggtcgtgga
cgtggtggagcatccaggcgctctgaatatcgtgttgtggtcactgggttgccttcttct
gcttcatggcaagaccttaaggatcatatgcgccgagcaggagatgtctgtttctcccaa
gtgttccgtgatggtagtggcaccacgggaattgttgattacacaaactatgaagacatg
aaatatgcgattaagaagctcgatgactctgagtttcgaaatgcattttctcaggcatat
gttcgtgtgagggaatatgattccaaacgggactcatctaggagccctggccgtgatcga
tctcattctagaggccgcagtgatagtcgcagtcgcagtttaagtcggagcaggagccgc
agcaagtctcctaaaaacaaatcttcacatcgttcatctgcgaggtctcctcctaggtct
gtttctcggtctcgctctgggtcaaggccacgctctctatcaagatcccgttcaagatca
agatctccacttccatctcgtcagaagcgcggtagcaaaagcccaaaaaagccaagtgtt
agcaggagccccagcagaagcagaagcagaagcagaagcagaagcaagagtttatcacgg
tga
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